Detail Information

Basic Information:


  VIRBase ID:  

VHID00282105

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-2-5p:           PLBD1:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-2-5p PLBD1
miRBase
Accession/Entrez ID		 MIMAT0000996 79887
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PLBD1
chr12:14692554(-) A-I      intronic
chr12:14705632(-) A-I      intronic
chr12:14687727(-) A-I      intronic
chr12:14697304(-) A-I      intronic
chr12:14705630(-) A-I      intronic
chr12:14689778(-) A-I      intronic
chr12:14697327(-) A-I      intronic
chr12:14668806(-) A-I      intronic
chr12:14669801(-) A-I      intronic
chr12:14705617(-) A-I      intronic
chr12:14686999(-) A-I      intronic
chr12:14669810(-) A-I      intronic
chr12:14669825(-) A-I      intronic
chr12:14684823(-) A-I      intronic
chr12:14689779(-) A-I      intronic
chr12:14663115(-) A-I      intronic
chr12:14668803(-) A-I      intronic
chr12:14691971(-) A-I      intronic
chr12:14689780(-) A-I      intronic
chr12:14716280(-) A-I      intronic
chr12:14670248(-) A-I      intronic
chr12:14705663(-) A-I      intronic
chr12:14687646(-) A-I      intronic
chr12:14692523(-) A-I      intronic
chr12:14699897(-) A-I      intronic
chr12:14714561(-) A-I      intronic
chr12:14691400(-) A-I      intronic
chr12:14670281(-) A-I      intronic
chr12:14657184(-) A-I      intronic
chr12:14687616(-) A-I      intronic
chr12:14670361(-) A-I      intronic
chr12:14670218(-) A-I      intronic
chr12:14687610(-) A-I      intronic
chr12:14705667(-) A-I      intronic
chr12:14691703(-) A-I      intronic
chr12:14705578(-) A-I      intronic
chr12:14687645(-) A-I      intronic
chr12:14691401(-) A-I      intronic
chr12:14687743(-) A-I      intronic
chr12:14668871(-) A-I      intronic
chr12:14691154(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PLBD1
chr12:14670281(-) A-G intron -    22484847
chr12:14692523(-) A-G intron -    22484847
chr12:14705663(-) A-G intron -    22484847
chr12:14705667(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PLBD1
chr12:14656680-14656681(-) m6A 3'UTR       24981863
chr12:14656688-14656689(-) m6A 3'UTR       24981863
chr12:14656720-14656721(-) m6A CDS       24981863
chr12:14656732-14656733(-) m6A CDS       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BHRF1-2-5p
Exosome B cell line (Raji)     21505438
PLBD1
Chromatin K562 cells     -
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-2-5p
Interactor2: PLBD1

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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