Detail Information

Basic Information:


  VIRBase ID:  

VHID00282058

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-2-5p:           PANK3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-2-5p PANK3
miRBase
Accession/Entrez ID		 MIMAT0000996 79646
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PANK3
chr5:167985303(-) A-I      intronic
chr5:168004113(-) A-I      intronic
chr5:168002669(-) A-I      intronic
chr5:167996328(-) A-I      intronic
chr5:168001822(-) A-I      intronic
chr5:168001779(-) A-I      intronic
chr5:168001744(-) A-I      intronic
chr5:168001742(-) A-I      intronic
chr5:167992824(-) A-I      intronic
chr5:167997190(-) A-I      intronic
chr5:168002708(-) A-I      intronic
chr5:167996350(-) A-I      intronic
chr5:167997328(-) A-I      intronic
chr5:167985298(-) A-I      intronic
chr5:167999270(-) A-I      intronic
chr5:167997162(-) A-I      intronic
chr5:167991722(-) A-I      intronic
chr5:167997321(-) A-I      intronic
chr5:167996443(-) A-I      intronic
chr5:167996354(-) A-I      intronic
chr5:168004157(-) A-I      intronic
chr5:167976805(-) A-I      3'UTR
chr5:167976874(-) A-I      3'UTR
chr5:167991546(-) A-I      intronic
chr5:168004053(-) A-I      intronic
chr5:167985173(-) A-I      intronic
chr5:167996854(-) A-I      intronic
chr5:167997041(-) A-I      intronic
chr5:168004024(-) A-I      intronic
chr5:168004156(-) A-I      intronic
chr5:167999327(-) A-I      intronic
chr5:167985967(-) A-I      intronic
chr5:167999297(-) A-I      intronic
chr5:167996973(-) A-I      intronic
chr5:168002675(-) A-I      intronic
chr5:167976866(-) A-I      3'UTR
chr5:167976863(-) A-I      3'UTR
chr5:167976893(-) A-I      3'UTR
chr5:167976883(-) A-I      3'UTR
chr5:167999301(-) A-I      intronic
chr5:168004102(-) A-I      intronic
chr5:168004165(-) A-I      intronic
chr5:167991662(-) A-I      intronic
chr5:167985304(-) A-I      intronic
chr5:168001693(-) A-I      intronic
chr5:167991727(-) A-I      intronic
chr5:168002667(-) A-I      intronic
chr5:168001814(-) A-I      intronic
chr5:168001700(-) A-I      intronic
chr5:167985945(-) A-I      intronic
chr5:167985983(-) A-I      intronic
chr5:167984940(-) A-I      intronic
chr5:167985277(-) A-I      intronic
chr5:167991642(-) A-I      intronic
chr5:168004050(-) A-I      intronic
chr5:167996840(-) A-I      intronic
chr5:168003963(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PANK3
chr5:167991727(-) A-I intron -    22327324
chr5:167985304(-) A-G intron -    22484847
chr5:167985861(-) T-C intron -    22484847
chr5:167985895(-) A-G intron -    22484847
chr5:167991661(-) A-G intron -    22484847
chr5:167991662(-) A-G intron -    22484847
chr5:167991727(-) A-G intron -    22484847
chr5:167996973(-) A-G intron -    22484847
chr5:167997007(-) A-G intron -    22484847
chr5:167997041(-) A-G intron -    22484847
chr5:167999197(-) A-G intron -    22484847
chr5:168001783(-) A-G intron -    22484847
chr5:168001803(-) A-G intron -    22484847
chr5:168001814(-) A-G intron -    22484847
chr5:168002667(-) A-G intron -    22484847
chr5:168002675(-) A-G intron -    22484847
chr5:168004165(-) A-G intron -    22484847
chr5:168004543(-) A-G intron -    22484847
chr5:168004571(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PANK3
chr5:167983291-167983292(-) m6A 3'UTR       24981863
chr5:167983366-167983367(-) m6A 3'UTR       24981863
chr5:167983391-167983392(-) m6A 3'UTR       24981863
chr5:167983462-167983463(-) m6A 3'UTR       24981863
chr5:167983511-167983512(-) m6A 3'UTR       24981863
chr5:167984431-167984432(-) m6A 3'UTR       24284625//24981863//22608085
chr5:167984487-167984488(-) m6A 3'UTR       24284625//24981863//22608085
chr5:167984524-167984525(-) m6A 3'UTR       24284625//24981863//22608085
chr5:167984530-167984531(-) m6A 3'UTR       24284625//24981863//22608085
chr5:167986042-167986043(-) m6A CDS//exon       24284625
chr5:167986102-167986103(-) m6A CDS//exon       24284625
chr5:167986133-167986134(-) m6A CDS//exon       24284625
chr5:167988473-167988474(-) Am CDS//exon       -
chr5:167993021-167993022(-) m6A CDS//exon       27773535
chr5:167993044-167993045(-) m6A CDS//exon       24284625//24209618//27773535//22608085
chr5:167993086-167993087(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr5:167993148-167993149(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:167993184-167993185(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:167993203-167993204(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:167993238-167993239(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:167993247-167993248(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:167993263-167993264(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:167995723-167995724(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr5:167995759-167995760(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr5:167995789-167995790(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:167995824-167995825(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:167995930-167995931(-) Cm CDS       -
chr5:167995944-167995945(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:167995970-167995971(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:167995981-167995982(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr5:168005655-168005656(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr5:168005698-168005699(-) m6A 5'UTR//intron       24284625//24209618//24981863//27371828//27773536//22608085
chr5:168006264-168006265(-) m6A 5'UTR//CDS       24284625//24209618//24981863//27371828//27773536//22608085
chr5:168006389-168006390(-) m6A 5'UTR       24284625//24209618//24981863//27371828//27773536
chr5:168006571-168006572(-) m6A 5'UTR       24209618//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BHRF1-2-5p
Exosome B cell line (Raji)     21505438
PANK3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-2-5p
Interactor2: PANK3

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence PARalyzer
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression Downregulation
Description We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).

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