Basic Information:

  VIRBase ID:  

VHID00280845

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-2-5p:  MIMAT0000996          RBM12:  NM_006047     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ebv-miR-BHRF1-2-5p	RBM12
miRBase Accession/Entrez ID	MIMAT0000996	10137
Organism	Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HRIHFB2091//SCZD19//SWAN

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RBM12	chr20:34240025-34240026(-) m6A 3'UTR       24981863//22608085 chr20:34240097-34240098(-) m6A 3'UTR       25456834//24981863//26404942//22608085 chr20:34240186-34240187(-) m6A 3'UTR       24981863//26404942//22608085 chr20:34240198-34240199(-) m6A 3'UTR       24981863//26404942//22608085 chr20:34240231-34240232(-) m6A 3'UTR       26404942//22608085 chr20:34240268-34240269(-) m6A 3'UTR       22608085 chr20:34240294-34240295(-) Y 3'UTR       25219674 chr20:34240914-34240915(-) m6A CDS       24981863//22608085 chr20:34240919-34240920(-) m6A CDS       24981863//22608085 chr20:34240946-34240947(-) m6A CDS       24284625//24981863//22608085 chr20:34240968-34240969(-) m6A CDS       24284625//24981863//22608085 chr20:34241186-34241187(-) m6A CDS       24284625//24981863//22608085 chr20:34241216-34241217(-) m6A CDS       24284625//24981863//27773535//22608085 chr20:34241246-34241247(-) m6A CDS       24284625//24981863//27773535//22608085 chr20:34241261-34241262(-) m6A CDS       24284625//24981863//27773535//22608085 chr20:34241276-34241277(-) m6A CDS       24284625//24981863//27773535//22608085 chr20:34241420-34241421(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chr20:34241486-34241487(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22608085 chr20:34241676-34241677(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr20:34241684-34241685(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr20:34241768-34241769(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr20:34241849-34241850(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr20:34241916-34241917(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr20:34242025-34242026(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr20:34242047-34242048(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr20:34242056-34242057(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr20:34242104-34242105(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085 chr20:34242156-34242157(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr20:34242378-34242379(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr20:34242438-34242439(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr20:34242696-34242697(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085 chr20:34242775-34242776(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22608085 chr20:34242799-34242800(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22608085 chr20:34242807-34242808(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22608085 chr20:34242891-34242892(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chr20:34242926-34242927(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085 chr20:34242970-34242971(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr20:34242992-34242993(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr20:34243127-34243128(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:34243191-34243192(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:34243198-34243199(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr20:34252360-34252361(-) m6A intron       24284625//24981863 chr20:34252372-34252373(-) m6A intron       24284625 chr20:34252675-34252676(-) m6A intron       24284625//24209618//25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ebv-miR-BHRF1-2-5p	Exosome B cell line (Raji)     21505438
	RBM12	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)|HeLa-S3 cells     - Membrane K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: ebv-miR-BHRF1-2-5p
Interactor2: RBM12

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg