Detail Information

Basic Information:


  VIRBase ID:  

VHID00279596

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-2-5p:           BBS2:      

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Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-2-5p BBS2
miRBase
Accession/Entrez ID		 MIMAT0000996 583
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - BBS//RP74

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BBS2
chr16:56551880(-) A-I      intronic
chr16:56528098(-) A-I      intronic
chr16:56528093(-) A-I      intronic
chr16:56528075(-) A-I      intronic
chr16:56520803(-) A-I      intronic
chr16:56551897(-) A-I      intronic
chr16:56551902(-) A-I      intronic
chr16:56551907(-) A-I      intronic
chr16:56551872(-) A-I      intronic
chr16:56528147(-) A-I      intronic
chr16:56551869(-) A-I      intronic
chr16:56520786(-) A-I      intronic
chr16:56542793(-) A-I      intronic
chr16:56542749(-) A-I      intronic
chr16:56542727(-) A-I      intronic
chr16:56542726(-) A-I      intronic
chr16:56542723(-) A-I      intronic
chr16:56542719(-) A-I      intronic
chr16:56542706(-) A-I      intronic
chr16:56542636(-) A-I      intronic
chr16:56542620(-) A-I      intronic
chr16:56553026(-) A-I      intronic
chr16:56520799(-) A-I      intronic
chr16:56520812(-) A-I      intronic
chr16:56520813(-) A-I      intronic
chr16:56522889(-) A-I      intronic
chr16:56522906(-) A-I      intronic
chr16:56524387(-) A-I      intronic
chr16:56524432(-) A-I      intronic
chr16:56520835(-) A-I      intronic
chr16:56524470(-) A-I      intronic
chr16:56527995(-) A-I      intronic
chr16:56528081(-) A-I      intronic
chr16:56553017(-) A-I      intronic
chr16:56543392(-) A-I      intronic
chr16:56528083(-) A-I      intronic
chr16:56520697(-) A-I      intronic
chr16:56522892(-) A-I      intronic
chr16:56550577(-) A-I      intronic
chr16:56528166(-) A-I      intronic
chr16:56520751(-) A-I      intronic
chr16:56551799(-) A-I      intronic
chr16:56528079(-) A-I      intronic
chr16:56541635(-) A-I      intronic
chr16:56527186(-) A-I      intronic
chr16:56527174(-) A-I      intronic
chr16:56528009(-) A-I      intronic
chr16:56523079(-) A-I      intronic
chr16:56524919(-) A-I      intronic
chr16:56520842(-) A-I      intronic
chr16:56523071(-) A-I      intronic
chr16:56528025(-) A-I      intronic
chr16:56541712(-) A-I      intronic
chr16:56524547(-) A-I      intronic
chr16:56524020(-) A-I      intronic
chr16:56524477(-) A-I      intronic
chr16:56523054(-) A-I      intronic
chr16:56543400(-) A-I      intronic
chr16:56524853(-) A-I      intronic
chr16:56523131(-) A-I      intronic
chr16:56524407(-) A-I      intronic
chr16:56550488(-) A-I      intronic
chr16:56523048(-) A-I      intronic
chr16:56527900(-) A-I      intronic
chr16:56527899(-) A-I      intronic
chr16:56524857(-) A-I      intronic
chr16:56542788(-) A-I      intronic
chr16:56524682(-) A-I      intronic
chr16:56524945(-) A-I      intronic
chr16:56527055(-) A-I      intronic
chr16:56550597(-) A-I      intronic
chr16:56524325(-) A-I      intronic
chr16:56527215(-) A-I      intronic
chr16:56553196(-) A-I      intronic
chr16:56527116(-) A-I      intronic
chr16:56541717(-) A-I      intronic
chr16:56553108(-) A-I      intronic
chr16:56524812(-) A-I      intronic
chr16:56528618(-) A-I      intronic
chr16:56528152(-) A-I      intronic
chr16:56524506(-) A-I      intronic
chr16:56543265(-) A-I      intronic
chr16:56551941(-) A-I      intronic
chr16:56520472(-) A-I      intronic
chr16:56522912(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BBS2
chr16:56504390-56504391(-) m6A 3'UTR//intron       27773535
chr16:56504399-56504400(-) m6A 3'UTR//intron       27773535
chr16:56518510-56518511(-) m6A 3'UTR//exon//intron       24981863
chr16:56518527-56518528(-) m6A 3'UTR//exon//intron       24981863
chr16:56518534-56518535(-) m6A 3'UTR//exon//intron       24981863
chr16:56518585-56518586(-) m6A 3'UTR//exon//intron       24981863
chr16:56553747-56553748(-) m6A CDS//exon//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BHRF1-2-5p
Exosome B cell line (Raji)     21505438
BBS2
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-2-5p
Interactor2: BBS2

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence PARalyzer
Support Database ViRBase//VIRmiRNA

References:


PMID 22291592 Target region CDS
Source ViRBase//VIRmiRNA Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression Downregulation
Description We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).

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