Detail Information

Basic Information:


  VIRBase ID:  

VHID00279001

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-1:           EPSTI1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-1 EPSTI1
miRBase
Accession/Entrez ID		 MIMAT0000995 94240
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - BRESI1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR EPSTI1
chr13:43563144(-) A-I      intronic
chr13:43563121(-) A-I      intronic
chr13:43563142(-) A-I      intronic
chr13:43565593(-) A-I      intronic
chr13:43565550(-) A-I      intronic
chr13:43563878(-) A-I      intronic
chr13:43563868(-) A-I      intronic
chr13:43565672(-) A-I      intronic
chr13:43525130(-) A-I      intronic
chr13:43563858(-) A-I      intronic
chr13:43563787(-) A-I      intronic
chr13:43563784(-) A-I      intronic
chr13:43514861(-) A-I      intronic
chr13:43563112(-) A-I      intronic
chr13:43565638(-) A-I      intronic
chr13:43563072(-) A-I      intronic
chr13:43563043(-) A-I      intronic
chr13:43562859(-) A-I      intronic
chr13:43562841(-) A-I      intronic
chr13:43562807(-) A-I      intronic
chr13:43562785(-) A-I      intronic
chr13:43565625(-) A-I      intronic
chr13:43515725(-) A-I      intronic
chr13:43562737(-) A-I      intronic
chr13:43562718(-) A-I      intronic
chr13:43553590(-) A-I      intronic
chr13:43552189(-) A-I      intronic
chr13:43562784(-) A-I      intronic
chr13:43552033(-) A-I      intronic
chr13:43565560(-) A-I      intronic
chr13:43536883(-) A-I      intronic
chr13:43532111(-) A-I      intronic
chr13:43531983(-) A-I      intronic
chr13:43531982(-) A-I      intronic
chr13:43563079(-) A-I      intronic
chr13:43531836(-) A-I      intronic
chr13:43553480(-) A-I      intronic
chr13:43531801(-) A-I      intronic
chr13:43484536(-) A-I      intronic
chr13:43531772(-) A-I      intronic
chr13:43525127(-) A-I      intronic
chr13:43563170(-) A-I      intronic
chr13:43565624(-) A-I      intronic
chr13:43552180(-) A-I      intronic
chr13:43522814(-) A-I      intronic
chr13:43565594(-) A-I      intronic
chr13:43565614(-) A-I      intronic
chr13:43562861(-) A-I      intronic
chr13:43563053(-) A-I      intronic
chr13:43482565(-) A-I      intronic
chr13:43563270(-) A-I      intronic
chr13:43563171(-) A-I      intronic
chr13:43562745(-) A-I      intronic
chr13:43525138(-) A-I      intronic
chr13:43515712(-) A-I      intronic
chr13:43553525(-) A-I      intronic
chr13:43562729(-) A-I      intronic
chr13:43562704(-) A-I      intronic
chr13:43563089(-) A-I      intronic
chr13:43562755(-) A-I      intronic
chr13:43563120(-) A-I      intronic
chr13:43562826(-) A-I      intronic
chr13:43562863(-) A-I      intronic
chr13:43473177(-) A-I      intronic
chr13:43563125(-) A-I      intronic
chr13:43496739(-) A-I      intronic
chr13:43563140(-) A-I      intronic
chr13:43512241(-) A-I      intronic
chr13:43514848(-) A-I      intronic
chr13:43562865(-) A-I      intronic
chr13:43522792(-) A-I      intronic
chr13:43562815(-) A-I      intronic
chr13:43562828(-) A-I      intronic
chr13:43529681(-) A-I      intronic
chr13:43522812(-) A-I      intronic
chr13:43563034(-) A-I      intronic
chr13:43563031(-) A-I      intronic
chr13:43563248(-) A-I      intronic
chr13:43563074(-) A-I      intronic
chr13:43562821(-) A-I      intronic
chr13:43563286(-) A-I      intronic
chr13:43564010(-) A-I      intronic
chr13:43496737(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED EPSTI1
chr13:43496737(-) A-G intron -    22484847
chr13:43496739(-) A-G intron -    22484847
chr13:43512241(-) A-G intron -    22484847
chr13:43562784(-) A-G intron -    22484847
chr13:43562826(-) A-G intron -    22484847
chr13:43563125(-) A-G intron -    22484847
chr13:43563140(-) A-G intron -    22484847
chr13:43563286(-) A-G intron -    22484847
chr13:43565560(-) A-G intron -    22484847
chr13:43565624(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase EPSTI1
chr13:43469223-43469224(-) m6A CDS//exon       27371828
chr13:43474453-43474454(-) m6A CDS//exon       28052920//27371828
chr13:43474458-43474459(-) m6A CDS//exon       28052920//27371828
chr13:43474504-43474505(-) m6A CDS//exon       27371828
chr13:43491688-43491689(-) m6A CDS//exon       27371828
chr13:43491716-43491717(-) m6A CDS//exon       27371828
chr13:43528119-43528120(-) m6A 3'UTR//CDS//exon       28052920//27773535//27371828
chr13:43528130-43528131(-) m6A 3'UTR//CDS//exon       28052920//27773535//27371828
chr13:43528148-43528149(-) m6A 3'UTR//CDS//exon       28052920//27773535//27371828
chr13:43537423-43537424(-) m6A 3'UTR//CDS//exon       28052920//27371828
chr13:43537668-43537669(-) m6A exon//intron       27371828
chr13:43537676-43537677(-) m6A exon//intron       27371828
chr13:43537692-43537693(-) m6A exon//intron       27371828
chr13:43537712-43537713(-) m6A exon//intron       27371828
chr13:43538240-43538241(-) m6A 3'UTR//5'UTR//CDS//exon       28052920//27371828
chr13:43538246-43538247(-) m6A 3'UTR//5'UTR//CDS//exon       28052920//27371828
chr13:43538257-43538258(-) m6A 3'UTR//5'UTR//CDS//exon       28052920//27371828
chr13:43543257-43543258(-) m6A 3'UTR//5'UTR//CDS//exon       28052920//27371828
chr13:43543267-43543268(-) m6A 5'UTR//CDS//exon       28052920//27371828
chr13:43543370-43543371(-) m6A exon//intron       28052920
chr13:43544770-43544771(-) m6A 5'UTR//CDS//exon//intron       27371828
chr13:43565278-43565279(-) m6A 5'UTR//exon//intron       27371828
chr13:43565290-43565291(-) m6A 5'UTR//exon//intron       27371828
chr13:43565382-43565383(-) m6A exon//intron       27371828
chr13:43566185-43566186(-) m6A CDS//exon       27371828//27773536
chr13:43566224-43566225(-) m6A CDS//exon       27371828//27773536
chr13:43566275-43566276(-) m6A CDS//exon       27371828//27773536
chr13:43566296-43566297(-) m6A CDS//exon       27371828
chr13:43566303-43566304(-) m6A 5'UTR//exon       27371828
chr13:43566318-43566319(-) m6A 5'UTR//exon       27371828
chr13:43566368-43566369(-) m6A 5'UTR//exon       24981863//27371828
chr13:43566403-43566404(-) m6A exon       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BHRF1-1
Exosome Jurkat-derived T cell line (J77cl20)     21505438
EPSTI1
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-1
Interactor2: EPSTI1

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence miRanda//PARalyzer//Targetscan
Support Database ViRBase//VIRmiRNA//VmiReg

References:


PMID 22291592 Target region 3'UTR
Source ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression Downregulation
Description We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).

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