Detail Information

Basic Information:


  VIRBase ID:  

VHID00278705

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-1:           RFX7:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-1 RFX7
miRBase
Accession/Entrez ID		 MIMAT0000995 64864
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - RFXDC2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RFX7
chr15:56479546(-) A-I      intronic
chr15:56449966(-) A-I      intronic
chr15:56408028(-) A-I      intronic
chr15:56407980(-) A-I      intronic
chr15:56450974(-) A-I      intronic
chr15:56407955(-) A-I      intronic
chr15:56407902(-) A-I      intronic
chr15:56407437(-) A-I      intronic
chr15:56450994(-) A-I      intronic
chr15:56459007(-) A-I      intronic
chr15:56496377(-) A-I      intronic
chr15:56407392(-) A-I      intronic
chr15:56407383(-) A-I      intronic
chr15:56407380(-) A-I      intronic
chr15:56459072(-) A-I      intronic
chr15:56479501(-) A-I      intronic
chr15:56407346(-) A-I      intronic
chr15:56407340(-) A-I      intronic
chr15:56406528(-) A-I      intronic
chr15:56406527(-) A-I      intronic
chr15:56406497(-) A-I      intronic
chr15:56406348(-) A-I      intronic
chr15:56399438(-) A-I      intronic
chr15:56399383(-) A-I      intronic
chr15:56399382(-) A-I      intronic
chr15:56399306(-) A-I      intronic
chr15:56481236(-) A-I      intronic
chr15:56481417(-) A-I      intronic
chr15:56441075(-) A-I      intronic
chr15:56481419(-) A-I      intronic
chr15:56481572(-) A-I      intronic
chr15:56476440(-) A-I      intronic
chr15:56406496(-) A-I      intronic
chr15:56491101(-) A-I      intronic
chr15:56491167(-) A-I      intronic
chr15:56492769(-) A-I      intronic
chr15:56407405(-) A-I      intronic
chr15:56492825(-) A-I      intronic
chr15:56492840(-) A-I      intronic
chr15:56492964(-) A-I      intronic
chr15:56494743(-) A-I      intronic
chr15:56494886(-) A-I      intronic
chr15:56496218(-) A-I      intronic
chr15:56496454(-) A-I      intronic
chr15:56496489(-) A-I      intronic
chr15:56521658(-) A-I      intronic
chr15:56521669(-) A-I      intronic
chr15:56521684(-) A-I      intronic
chr15:56521692(-) A-I      intronic
chr15:56521709(-) A-I      intronic
chr15:56406487(-) A-I      intronic
chr15:56494888(-) A-I      intronic
chr15:56408093(-) A-I      intronic
chr15:56450896(-) A-I      intronic
chr15:56408040(-) A-I      intronic
chr15:56406595(-) A-I      intronic
chr15:56481159(-) A-I      intronic
chr15:56481416(-) A-I      intronic
chr15:56481127(-) A-I      intronic
chr15:56476516(-) A-I      intronic
chr15:56481367(-) A-I      intronic
chr15:56449926(-) A-I      intronic
chr15:56408016(-) A-I      intronic
chr15:56441045(-) A-I      intronic
chr15:56441159(-) A-I      intronic
chr15:56441197(-) A-I      intronic
chr15:56449916(-) A-I      intronic
chr15:56441090(-) A-I      intronic
chr15:56459044(-) A-I      intronic
chr15:56481364(-) A-I      intronic
chr15:56449915(-) A-I      intronic
chr15:56450898(-) A-I      intronic
chr15:56476387(-) A-I      intronic
chr15:56527383(-) A-I      intronic
chr15:56407275(-) A-I      intronic
chr15:56494885(-) A-I      intronic
chr15:56510534(-) A-I      intronic
chr15:56523113(-) A-I      intronic
chr15:56411201(-) A-I      intronic
chr15:56408023(-) A-I      intronic
chr15:56407406(-) A-I      intronic
chr15:56421317(-) A-I      intronic
chr15:56433561(-) A-I      intronic
chr15:56494958(-) A-I      intronic
chr15:56494847(-) A-I      intronic
chr15:56441157(-) A-I      intronic
chr15:56451010(-) A-I      intronic
chr15:56496294(-) A-I      intronic
chr15:56476314(-) A-I      intronic
chr15:56450959(-) A-I      intronic
chr15:56496355(-) A-I      intronic
chr15:56449918(-) A-I      intronic
chr15:56523103(-) A-I      intronic
chr15:56459459(-) A-I      intronic
chr15:56479511(-) A-I      intronic
chr15:56494927(-) A-I      intronic
chr15:56407348(-) A-I      intronic
chr15:56510533(-) A-I      intronic
chr15:56523174(-) A-I      intronic
chr15:56473124(-) A-I      intronic
chr15:56521683(-) A-I      intronic
chr15:56450912(-) A-I      intronic
chr15:56450888(-) A-I      intronic
chr15:56496235(-) A-I      intronic
chr15:56481128(-) A-I      intronic
chr15:56407345(-) A-I      intronic
chr15:56408018(-) A-I      intronic
chr15:56481575(-) A-I      intronic
chr15:56523184(-) A-I      intronic
chr15:56407932(-) A-I      intronic
chr15:56521668(-) A-I      intronic
chr15:56481173(-) A-I      intronic
chr15:56407947(-) A-I      intronic
chr15:56421315(-) A-I      intronic
chr15:56476509(-) A-I      intronic
chr15:56439976(-) A-I      intronic
chr15:56494799(-) A-I      intronic
chr15:56494923(-) A-I      intronic
chr15:56439977(-) A-I      intronic
chr15:56407483(-) A-I      intronic
chr15:56509143(-) A-I      intronic
chr15:56407482(-) A-I      intronic
chr15:56481521(-) A-I      intronic
chr15:56510505(-) A-I      intronic
chr15:56423558(-) A-I      intronic
chr15:56408102(-) A-I      intronic
chr15:56441234(-) A-I      intronic
chr15:56411211(-) A-I      intronic
chr15:56496297(-) A-I      intronic
chr15:56481516(-) A-I      intronic
chr15:56496420(-) A-I      intronic
chr15:56421473(-) A-I      intronic
chr15:56481537(-) A-I      intronic
chr15:56450911(-) A-I      intronic
chr15:56407276(-) A-I      intronic
chr15:56494767(-) A-I      intronic
chr15:56439939(-) A-I      intronic
chr15:56421382(-) A-I      intronic
chr15:56472911(-) A-I      intronic
chr15:56494928(-) A-I      intronic
chr15:56408096(-) A-I      intronic
chr15:56496512(-) A-I      intronic
chr15:56441115(-) A-I      intronic
chr15:56481413(-) A-I      intronic
chr15:56496483(-) A-I      intronic
chr15:56407336(-) A-I      intronic
chr15:56521666(-) A-I      intronic
chr15:56523125(-) A-I      intronic
chr15:56496425(-) A-I      intronic
chr15:56406352(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RFX7
chr15:56496235(-) A-I intron -    15342557
chr15:56496294(-) A-I intron -    15342557
chr15:56496355(-) A-I intron -    15342557
chr15:56496377(-) A-I intron -    15342557
chr15:56496425(-) A-I intron -    15342557
chr15:56496483(-) A-I intron -    15342557
chr15:56496512(-) A-I intron -    15342557
chr15:56525648(-) G-A intron -    22484847
chr15:56451010(-) A-G intron -    22484847
chr15:56465956(-) T-C intron -    22484847
chr15:56481413(-) A-G intron -    22484847
chr15:56509143(-) A-G intron -    22484847
chr15:56523103(-) A-G intron -    22484847
chr15:56531310(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RFX7
chr15:56379623-56379624(-) m6A 3'UTR       25456834//27773535//22608085
chr15:56379637-56379638(-) m6A 3'UTR       25456834//27773535//22608085
chr15:56379656-56379657(-) m6A 3'UTR       25456834//27773535//22608085
chr15:56380150-56380151(-) m6A 3'UTR       27773535
chr15:56382734-56382735(-) m6A 3'UTR//intron       27773535
chr15:56382748-56382749(-) m6A 3'UTR//intron       27773535
chr15:56382758-56382759(-) m6A 3'UTR//intron       27773535
chr15:56382844-56382845(-) m6A 3'UTR//intron       27773535
chr15:56382922-56382923(-) m6A 3'UTR//intron       27773535
chr15:56383019-56383020(-) m6A 3'UTR//intron       24981863
chr15:56383072-56383073(-) m6A 3'UTR//intron       24981863
chr15:56384471-56384472(-) m6A 3'UTR//intron       27773535
chr15:56384481-56384482(-) m6A 3'UTR//intron       27773535
chr15:56384505-56384506(-) m6A 3'UTR//intron       27773535
chr15:56384804-56384805(-) m6A 3'UTR//intron       27773535
chr15:56384902-56384903(-) m6A 3'UTR//intron       27773535
chr15:56385504-56385505(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr15:56385570-56385571(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//22608085
chr15:56385686-56385687(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr15:56385723-56385724(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr15:56385732-56385733(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr15:56385844-56385845(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr15:56385855-56385856(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr15:56385870-56385871(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr15:56385988-56385989(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr15:56386061-56386062(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr15:56386113-56386114(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr15:56386157-56386158(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr15:56386191-56386192(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:56386225-56386226(-) m6A CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr15:56386465-56386466(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr15:56386508-56386509(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr15:56386589-56386590(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:56386613-56386614(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:56386637-56386638(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr15:56386650-56386651(-) m6A CDS       24284625//24981863//22575960//22608085
chr15:56386661-56386662(-) m6A CDS       24284625//24981863//22575960//22608085
chr15:56386747-56386748(-) m6A CDS       24284625//27773535//22608085
chr15:56386772-56386773(-) m6A CDS       24284625//27773535
chr15:56386784-56386785(-) m6A CDS       24284625//27773535
chr15:56386966-56386967(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr15:56387223-56387224(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr15:56387282-56387283(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr15:56387314-56387315(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr15:56387345-56387346(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr15:56387439-56387440(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr15:56387534-56387535(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr15:56387622-56387623(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr15:56387648-56387649(-) m6A CDS       24284625//24981863//26404942//27773535//22608085
chr15:56387683-56387684(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:56387690-56387691(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:56387812-56387813(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr15:56387838-56387839(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr15:56387858-56387859(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr15:56387891-56387892(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr15:56387903-56387904(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr15:56387926-56387927(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr15:56387982-56387983(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr15:56388036-56388037(-) m6A CDS       24284625//24981863//28052920//27773535//22575960//22608085
chr15:56388127-56388128(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:56388182-56388183(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22608085
chr15:56388235-56388236(-) m6A CDS       24284625//24981863//26404942//27773535//27371828//22608085
chr15:56388261-56388262(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr15:56388298-56388299(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr15:56388305-56388306(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr15:56388331-56388332(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr15:56388424-56388425(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:56388455-56388456(-) m6A CDS       24284625//24981863//27773535//22608085
chr15:56388550-56388551(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//22608085
chr15:56388612-56388613(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr15:56388620-56388621(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr15:56388694-56388695(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr15:56388707-56388708(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr15:56388808-56388809(-) m6A CDS       24284625//24981863//27773535//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BHRF1-1
Exosome Jurkat-derived T cell line (J77cl20)     21505438
RFX7
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-1
Interactor2: RFX7

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence miRanda//PARalyzer//Targetscan
Support Database ViRBase//VmiReg

References:


PMID 22291592 Target region 3'UTR
Source ViRBase//VmiReg Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression Downregulation
Description We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).

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