Detail Information

Basic Information:


  VIRBase ID:  

VHID00278556

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.6002

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      ebv-miR-BHRF1-1:           STARD7:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol ebv-miR-BHRF1-1 STARD7
miRBase
Accession/Entrez ID		 MIMAT0000995 56910
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category miRNA mRNA
Alias - FAME2//GTT1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR STARD7
chr2:96854125(-) A-I      intronic
chr2:96856208(-) A-I      intronic
chr2:96856224(-) A-I      intronic
chr2:96854116(-) A-I      intronic
chr2:96854119(-) A-I      intronic
chr2:96862311(-) A-I      intronic
chr2:96862304(-) A-I      intronic
chr2:96862282(-) A-I      intronic
chr2:96856877(-) A-I      intronic
chr2:96856857(-) A-I      intronic
chr2:96856781(-) A-I      intronic
chr2:96856680(-) A-I      intronic
chr2:96856672(-) A-I      intronic
chr2:96856667(-) A-I      intronic
chr2:96854785(-) A-I      intronic
chr2:96855251(-) A-I      intronic
chr2:96854886(-) A-I      intronic
chr2:96866033(-) A-I      intronic
chr2:96865996(-) A-I      intronic
chr2:96863978(-) A-I      intronic
chr2:96863949(-) A-I      intronic
chr2:96854859(-) A-I      intronic
chr2:96854858(-) A-I      intronic
chr2:96854550(-) A-I      intronic
chr2:96854450(-) A-I      intronic
chr2:96854387(-) A-I      intronic
chr2:96854370(-) A-I      intronic
chr2:96854363(-) A-I      intronic
chr2:96854152(-) A-I      intronic
chr2:96854106(-) A-I      intronic
chr2:96853914(-) A-I      intronic
chr2:96853834(-) A-I      intronic
chr2:96853822(-) A-I      intronic
chr2:96863075(-) A-I      intronic
chr2:96863011(-) A-I      intronic
chr2:96862977(-) A-I      intronic
chr2:96862960(-) A-I      intronic
chr2:96856486(-) A-I      intronic
chr2:96862951(-) A-I      intronic
chr2:96856485(-) A-I      intronic
chr2:96856318(-) A-I      intronic
chr2:96856314(-) A-I      intronic
chr2:96856240(-) A-I      intronic
chr2:96855381(-) A-I      intronic
chr2:96855356(-) A-I      intronic
chr2:96855311(-) A-I      intronic
chr2:96855295(-) A-I      intronic
chr2:96855294(-) A-I      intronic
chr2:96855260(-) A-I      intronic
chr2:96862913(-) A-I      intronic
chr2:96862371(-) A-I      intronic
chr2:96862368(-) A-I      intronic
chr2:96862328(-) A-I      intronic
chr2:96853757(-) A-I      intronic
chr2:96861768(-) A-I      intronic
chr2:96854365(-) A-I      intronic
chr2:96854520(-) A-I      intronic
chr2:96854188(-) A-I      intronic
chr2:96856269(-) A-I      intronic
chr2:96854569(-) A-I      intronic
chr2:96856821(-) A-I      intronic
chr2:96854780(-) A-I      intronic
chr2:96853831(-) A-I      intronic
chr2:96856170(-) A-I      intronic
chr2:96854041(-) A-I      intronic
chr2:96853930(-) A-I      intronic
chr2:96854349(-) A-I      intronic
chr2:96856803(-) A-I      intronic
chr2:96854771(-) A-I      intronic
chr2:96862405(-) A-I      intronic
chr2:96863060(-) A-I      intronic
chr2:96854217(-) A-I      intronic
chr2:96854377(-) A-I      intronic
chr2:96855277(-) A-I      intronic
chr2:96854532(-) A-I      intronic
chr2:96855221(-) A-I      intronic
chr2:96862466(-) A-I      intronic
chr2:96856453(-) A-I      intronic
chr2:96869604(-) A-I      intronic
chr2:96866540(-) A-I      intronic
chr2:96854973(-) A-I      intronic
chr2:96853865(-) A-I      intronic
chr2:96854826(-) A-I      intronic
chr2:96855374(-) A-I      intronic
chr2:96853892(-) A-I      intronic
chr2:96854111(-) A-I      intronic
chr2:96854286(-) A-I      intronic
chr2:96866453(-) A-I      intronic
chr2:96855321(-) A-I      intronic
chr2:96853792(-) A-I      intronic
chr2:96854285(-) A-I      intronic
chr2:96853931(-) A-I      intronic
chr2:96861775(-) A-I      intronic
chr2:96856846(-) A-I      intronic
chr2:96854419(-) A-I      intronic
chr2:96856684(-) A-I      intronic
chr2:96853796(-) A-I      intronic
chr2:96866020(-) A-I      intronic
chr2:96854951(-) A-I      intronic
chr2:96862136(-) A-I      intronic
chr2:96856482(-) A-I      intronic
chr2:96862190(-) A-I      intronic
chr2:96856545(-) A-I      intronic
chr2:96854960(-) A-I      intronic
chr2:96854231(-) A-I      intronic
chr2:96854151(-) A-I      intronic
chr2:96854142(-) A-I      intronic
chr2:96856159(-) A-I      intronic
chr2:96853793(-) A-I      intronic
chr2:96853905(-) A-I      intronic
chr2:96862029(-) A-I      intronic
chr2:96862179(-) A-I      intronic
chr2:96865914(-) A-I      intronic
chr2:96854753(-) A-I      intronic
chr2:96856213(-) A-I      intronic
chr2:96854549(-) A-I      intronic
chr2:96856791(-) A-I      intronic
chr2:96862472(-) A-I      intronic
chr2:96856755(-) A-I      intronic
chr2:96863021(-) A-I      intronic
chr2:96854220(-) A-I      intronic
chr2:96856900(-) A-I      intronic
chr2:96853966(-) A-I      intronic
chr2:96856472(-) A-I      intronic
chr2:96856734(-) A-I      intronic
chr2:96854264(-) A-I      intronic
chr2:96856881(-) A-I      intronic
chr2:96854854(-) A-I      intronic
chr2:96862351(-) A-I      intronic
chr2:96854839(-) A-I      intronic
chr2:96853950(-) A-I      intronic
chr2:96863810(-) A-I      intronic
chr2:96862138(-) A-I      intronic
chr2:96854245(-) A-I      intronic
chr2:96853633(-) A-I      intronic
chr2:96854178(-) A-I      intronic
chr2:96854417(-) A-I      intronic
chr2:96862055(-) A-I      intronic
chr2:96854816(-) A-I      intronic
chr2:96856851(-) A-I      intronic
chr2:96866062(-) A-I      intronic
chr2:96854851(-) A-I      intronic
chr2:96853932(-) A-I      intronic
chr2:96854216(-) A-I      intronic
chr2:96854959(-) A-I      intronic
chr2:96863892(-) A-I      intronic
chr2:96855186(-) A-I      intronic
chr2:96853750(-) A-I      intronic
chr2:96856736(-) A-I      intronic
chr2:96853901(-) A-I      intronic
chr2:96862433(-) A-I      intronic
chr2:96862079(-) A-I      intronic
chr2:96862471(-) A-I      intronic
chr2:96856463(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED STARD7
chr2:96856872(-) A-I intron -    21960545
chr2:96856877(-) A-I intron -    21960545
chr2:96851899(-) A-T exon 3'UTR    22484847
chr2:96853793(-) A-G intron -    22484847
chr2:96853892(-) A-G intron -    22484847
chr2:96853902(-) A-G intron -    22484847
chr2:96854151(-) A-G intron -    22484847
chr2:96854286(-) A-G intron -    22484847
chr2:96854417(-) A-G intron -    22484847
chr2:96854419(-) A-G intron -    22484847
chr2:96854532(-) A-G intron -    22484847
chr2:96854569(-) A-G intron -    22484847
chr2:96854697(-) G-A intron -    22484847
chr2:96854812(-) A-G intron -    22484847
chr2:96854826(-) A-G intron -    22484847
chr2:96854839(-) A-G intron -    22484847
chr2:96854973(-) A-G intron -    22484847
chr2:96855360(-) A-G intron -    22484847
chr2:96856501(-) A-G intron -    22484847
chr2:96856791(-) A-G intron -    22484847
chr2:96856803(-) A-G intron -    22484847
chr2:96856821(-) A-G intron -    22484847
chr2:96856846(-) A-G intron -    22484847
chr2:96856872(-) A-G intron -    22484847
chr2:96856881(-) A-G intron -    22484847
chr2:96860103(-) C-T intron -    22484847
chr2:96861768(-) A-G intron -    22484847
chr2:96861775(-) A-G intron -    22484847
chr2:96862138(-) A-G intron -    22484847
chr2:96862338(-) A-G intron -    22484847
chr2:96862351(-) A-G intron -    22484847
chr2:96862402(-) A-G intron -    22484847
chr2:96862466(-) A-G intron -    22484847
chr2:96862471(-) A-G intron -    22484847
chr2:96862472(-) A-G intron -    22484847
chr2:96863060(-) A-G intron -    22484847
chr2:96863810(-) A-G intron -    22484847
chr2:96863892(-) A-G intron -    22484847
chr2:96863975(-) A-G intron -    22484847
chr2:96865914(-) A-G intron -    22484847
chr2:96865932(-) A-G intron -    22484847
chr2:96865976(-) A-G intron -    22484847
chr2:96866018(-) A-G intron -    22484847
chr2:96866020(-) A-G intron -    22484847
chr2:96866062(-) A-G intron -    22484847
chr2:96866081(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase STARD7
chr2:96850862-96850863(-) m6A 3'UTR//exon       26404942
chr2:96851633-96851634(-) m6A 3'UTR//exon       26404942
chr2:96851670-96851671(-) m6A 3'UTR//exon       24284625//24981863//26404942
chr2:96851680-96851681(-) m6A 3'UTR//exon       24284625//24981863//26404942
chr2:96851830-96851831(-) m6A 3'UTR//exon       24284625//24981863//26404942//22575960
chr2:96851855-96851856(-) m6A 3'UTR//exon       24284625//24981863
chr2:96851930-96851931(-) m6A 3'UTR//exon       24284625//24981863
chr2:96852203-96852204(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr2:96852289-96852290(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr2:96852391-96852392(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:96852445-96852446(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:96852579-96852580(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr2:96874221-96874222(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr2:96874287-96874288(-) m6A 5'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr2:96874316-96874317(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr2:96874342-96874343(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ebv-miR-BHRF1-1
Exosome Jurkat-derived T cell line (J77cl20)     21505438
STARD7
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: ebv-miR-BHRF1-1
Interactor2: STARD7

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence miRanda//PARalyzer//Targetscan
Support Database ViRBase//VIRmiRNA//VmiReg

References:


PMID 22291592 Target region 3'UTR
Source ViRBase//VIRmiRNA//VmiReg Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression Downregulation
Description We identified 7,827 miRNA-interaction sites in 3,492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.We identified an additional 2,972 CDS miRNA-interaction sites present in at least two libraries, 89.7% of which could be assigned to a miRNA (Table S7).

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