Detail Information

Basic Information:


  VIRBase ID:  

VHID00276937

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.8589

  Interaction Type:  

Virus-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol EBER2 SLCO5A1
miRBase
Accession/Entrez ID		 EBER2 81796
Organism Human gammaherpesvirus 4 (Epstein-Barr virus, EPV) Homo sapiens
Category lncRNA mRNA
Alias - OATP-J//OATP-RP4//OATP5A1//OATPJ//OATPRP4//SLC21A15

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLCO5A1
chr8:70644949(-) A-I      intronic
chr8:70668578(-) A-I      intronic
chr8:70733511(-) A-I      intronic
chr8:70587668(-) A-I      intronic
chr8:70587574(-) A-I      intronic
chr8:70636281(-) A-I      intronic
chr8:70641490(-) A-I      intronic
chr8:70641512(-) A-I      intronic
chr8:70641635(-) A-I      intronic
chr8:70641641(-) A-I      intronic
chr8:70670578(-) A-I      intronic
chr8:70645002(-) A-I      intronic
chr8:70645041(-) A-I      intronic
chr8:70663957(-) A-I      intronic
chr8:70664014(-) A-I      intronic
chr8:70664365(-) A-I      intronic
chr8:70668460(-) A-I      intronic
chr8:70668474(-) A-I      intronic
chr8:70668483(-) A-I      intronic
chr8:70674546(-) A-I      intronic
chr8:70674624(-) A-I      intronic
chr8:70675353(-) A-I      intronic
chr8:70675372(-) A-I      intronic
chr8:70675435(-) A-I      intronic
chr8:70676168(-) A-I      intronic
chr8:70676185(-) A-I      intronic
chr8:70676295(-) A-I      intronic
chr8:70683344(-) A-I      intronic
chr8:70683438(-) A-I      intronic
chr8:70688141(-) A-I      intronic
chr8:70694021(-) A-I      intronic
chr8:70694093(-) A-I      intronic
chr8:70705397(-) A-I      intronic
chr8:70705398(-) A-I      intronic
chr8:70715570(-) A-I      intronic
chr8:70716823(-) A-I      intronic
chr8:70720067(-) A-I      intronic
chr8:70720077(-) A-I      intronic
chr8:70721135(-) A-I      intronic
chr8:70721174(-) A-I      intronic
chr8:70721183(-) A-I      intronic
chr8:70721331(-) A-I      intronic
chr8:70740718(-) A-I      intronic
chr8:70740725(-) A-I      intronic
chr8:70741905(-) A-I      intronic
chr8:70675428(-) A-I      intronic
chr8:70634362(-) A-I      intronic
chr8:70634368(-) A-I      intronic
chr8:70636104(-) A-I      intronic
chr8:70634172(-) A-I      intronic
chr8:70634279(-) A-I      intronic
chr8:70615141(-) A-I      intronic
chr8:70634350(-) A-I      intronic
chr8:70634355(-) A-I      intronic
chr8:70587506(-) A-I      intronic
chr8:70634298(-) A-I      intronic
chr8:70636136(-) A-I      intronic
chr8:70636258(-) A-I      intronic
chr8:70587507(-) A-I      intronic
chr8:70636152(-) A-I      intronic
chr8:70587625(-) A-I      intronic
chr8:70636264(-) A-I      intronic
chr8:70664223(-) A-I      intronic
chr8:70683423(-) A-I      intronic
chr8:70638820(-) A-I      intronic
chr8:70664207(-) A-I      intronic
chr8:70644944(-) A-I      intronic
chr8:70668557(-) A-I      intronic
chr8:70676294(-) A-I      intronic
chr8:70705385(-) A-I      intronic
chr8:70587547(-) A-I      intronic
chr8:70664384(-) A-I      intronic
chr8:70638899(-) A-I      intronic
chr8:70683392(-) A-I      intronic
chr8:70664231(-) A-I      intronic
chr8:70587538(-) A-I      intronic
chr8:70664286(-) A-I      intronic
chr8:70622481(-) A-I      intronic
chr8:70664033(-) A-I      intronic
chr8:70664383(-) A-I      intronic
chr8:70670537(-) A-I      intronic
chr8:70682586(-) A-I      intronic
chr8:70664041(-) A-I      intronic
chr8:70655610(-) A-I      intronic
chr8:70716677(-) A-I      intronic
chr8:70694060(-) A-I      intronic
chr8:70634234(-) A-I      intronic
chr8:70705951(-) A-I      intronic
chr8:70670688(-) A-I      intronic
chr8:70666042(-) A-I      intronic
chr8:70635560(-) A-I      intronic
chr8:70694632(-) A-I      intronic
chr8:70670634(-) A-I      intronic
chr8:70639017(-) A-I      intronic
chr8:70668393(-) A-I      intronic
chr8:70638831(-) A-I      intronic
chr8:70622535(-) A-I      intronic
chr8:70715576(-) A-I      intronic
chr8:70716842(-) A-I      intronic
chr8:70668577(-) A-I      intronic
chr8:70683384(-) A-I      intronic
chr8:70721287(-) A-I      intronic
chr8:70668400(-) A-I      intronic
chr8:70705396(-) A-I      intronic
chr8:70721335(-) A-I      intronic
chr8:70670560(-) A-I      intronic
chr8:70668402(-) A-I      intronic
chr8:70683437(-) A-I      intronic
chr8:70716745(-) A-I      intronic
chr8:70675693(-) A-I      intronic
chr8:70587615(-) A-I      intronic
chr8:70715540(-) A-I      intronic
chr8:70721177(-) A-I      intronic
chr8:70702753(-) A-I      intronic
chr8:70676303(-) A-I      intronic
chr8:70720071(-) A-I      intronic
chr8:70668563(-) A-I      intronic
chr8:70705314(-) A-I      intronic
chr8:70587153(-) A-I      intronic
chr8:70664077(-) A-I      intronic
chr8:70705412(-) A-I      intronic
chr8:70636036(-) A-I      intronic
chr8:70716815(-) A-I      intronic
chr8:70716686(-) A-I      intronic
chr8:70619220(-) A-I      intronic
chr8:70619261(-) A-I      intronic
chr8:70682612(-) A-I      intronic
chr8:70664404(-) A-I      intronic
chr8:70676293(-) A-I      intronic
chr8:70715352(-) A-I      intronic
chr8:70721227(-) A-I      intronic
chr8:70663958(-) A-I      intronic
chr8:70664397(-) A-I      intronic
chr8:70616368(-) A-I      intronic
chr8:70721256(-) A-I      intronic
chr8:70587639(-) A-I      intronic
chr8:70721083(-) A-I      intronic
chr8:70705950(-) A-I      intronic
chr8:70720218(-) A-I      intronic
chr8:70636132(-) A-I      intronic
chr8:70663850(-) A-I      intronic
chr8:70587223(-) A-I      intronic
chr8:70705423(-) A-I      intronic
chr8:70668540(-) A-I      intronic
chr8:70587534(-) A-I      intronic
chr8:70676296(-) A-I      intronic
chr8:70668437(-) A-I      intronic
chr8:70635611(-) A-I      intronic
chr8:70619195(-) A-I      intronic
chr8:70670543(-) A-I      intronic
chr8:70668564(-) A-I      intronic
chr8:70607674(-) A-I      intronic
chr8:70622418(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLCO5A1
chr8:70663958(-) A-I intron -    22327324
chr8:70602536(-) A-G intron -    21725310
chr8:70587193(-) A-G intron -    22484847
chr8:70587534(-) A-G intron -    22484847
chr8:70587538(-) A-G intron -    22484847
chr8:70587639(-) A-G intron -    22484847
chr8:70595977(-) G-A intron -    22484847
chr8:70607674(-) A-G intron -    22484847
chr8:70609574(-) C-T intron -    22484847
chr8:70616385(-) C-G intron -    22484847
chr8:70616429(-) T-G intron -    22484847
chr8:70619195(-) A-G intron -    22484847
chr8:70619220(-) A-G intron -    22484847
chr8:70619261(-) A-G intron -    22484847
chr8:70622481(-) A-G intron -    22484847
chr8:70636132(-) A-G intron -    22484847
chr8:70638820(-) A-G intron -    22484847
chr8:70638872(-) A-G intron -    22484847
chr8:70639017(-) A-G intron -    22484847
chr8:70644944(-) A-G intron -    22484847
chr8:70663850(-) A-G intron -    22484847
chr8:70663878(-) A-G intron -    22484847
chr8:70663958(-) A-G intron -    22484847
chr8:70664033(-) A-G intron -    22484847
chr8:70664041(-) A-G intron -    22484847
chr8:70664077(-) A-G intron -    22484847
chr8:70664286(-) A-G intron -    22484847
chr8:70664383(-) A-G intron -    22484847
chr8:70664384(-) A-G intron -    22484847
chr8:70664397(-) A-G intron -    22484847
chr8:70664398(-) A-G intron -    22484847
chr8:70664404(-) A-G intron -    22484847
chr8:70664460(-) A-G intron -    22484847
chr8:70668402(-) A-G intron -    22484847
chr8:70668437(-) A-G intron -    22484847
chr8:70668468(-) A-G intron -    22484847
chr8:70668477(-) A-G intron -    22484847
chr8:70668540(-) A-G intron -    22484847
chr8:70668557(-) A-G intron -    22484847
chr8:70668563(-) A-G intron -    22484847
chr8:70668564(-) A-G intron -    22484847
chr8:70668577(-) A-G intron -    22484847
chr8:70668639(-) A-G intron -    22484847
chr8:70669831(-) A-G intron -    22484847
chr8:70670435(-) G-A intron -    22484847
chr8:70670524(-) A-G intron -    22484847
chr8:70670537(-) A-G intron -    22484847
chr8:70670543(-) A-G intron -    22484847
chr8:70670560(-) A-G intron -    22484847
chr8:70670614(-) A-G intron -    22484847
chr8:70670633(-) A-G intron -    22484847
chr8:70670634(-) A-G intron -    22484847
chr8:70670688(-) A-G intron -    22484847
chr8:70670696(-) A-G intron -    22484847
chr8:70672112(-) T-C intron -    22484847
chr8:70676293(-) A-G intron -    22484847
chr8:70676294(-) A-G intron -    22484847
chr8:70676296(-) A-G intron -    22484847
chr8:70676303(-) A-G intron -    22484847
chr8:70680124(-) G-T intron -    22484847
chr8:70682612(-) A-G intron -    22484847
chr8:70683423(-) A-G intron -    22484847
chr8:70683437(-) A-G intron -    22484847
chr8:70694060(-) A-G intron -    22484847
chr8:70705314(-) A-G intron -    22484847
chr8:70705401(-) A-G intron -    22484847
chr8:70705412(-) A-G intron -    22484847
chr8:70705423(-) A-G intron -    22484847
chr8:70705754(-) A-G intron -    22484847
chr8:70705950(-) A-G intron -    22484847
chr8:70705951(-) A-G intron -    22484847
chr8:70705956(-) A-G intron -    22484847
chr8:70715540(-) A-G intron -    22484847
chr8:70715569(-) A-G intron -    22484847
chr8:70715576(-) A-G intron -    22484847
chr8:70716677(-) A-G intron -    22484847
chr8:70716681(-) A-G intron -    22484847
chr8:70716686(-) A-G intron -    22484847
chr8:70716815(-) A-G intron -    22484847
chr8:70716824(-) A-G intron -    22484847
chr8:70716842(-) A-G intron -    22484847
chr8:70720071(-) A-G intron -    22484847
chr8:70721177(-) A-G intron -    22484847
chr8:70721227(-) A-G intron -    22484847
chr8:70721256(-) A-G intron -    22484847
chr8:70721287(-) A-G intron -    22484847
chr8:70742674(-) A-G intron -    22484847
chr8:70742701(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLCO5A1
chr8:70584699-70584700(-) m6A 3'UTR       25456834//24981863//22608085
chr8:70584734-70584735(-) m6A 3'UTR       25456834//24981863//22608085
chr8:70584755-70584756(-) m6A 3'UTR       25456834//24981863//22608085
chr8:70584802-70584803(-) m6A 3'UTR       25456834//24981863//22608085
chr8:70584927-70584928(-) m6A 3'UTR       24981863//22608085
chr8:70584976-70584977(-) m6A 3'UTR       24981863//22608085
chr8:70584985-70584986(-) m6A 3'UTR       24981863//22608085
chr8:70584998-70584999(-) m6A 3'UTR       24981863//22608085
chr8:70585044-70585045(-) m6A 3'UTR       24981863//22608085
chr8:70585149-70585150(-) m6A 3'UTR//CDS       24209618//25456834//24981863//28052920//22608085
chr8:70585192-70585193(-) m6A 3'UTR//CDS       24209618//25456834//24981863//28052920//27773536//22608085
chr8:70585228-70585229(-) m6A 3'UTR//CDS       24209618//25456834//24981863//28052920//27371828//27773536//22608085
chr8:70585276-70585277(-) m6A 3'UTR//CDS       25456834//24981863//28052920//27371828//27773536//22608085
chr8:70585295-70585296(-) m6A 3'UTR//CDS       25456834//24981863//28052920//27773536//22608085
chr8:70585352-70585353(-) m6A 3'UTR//CDS       25456834//24981863//28052920//22608085
chr8:70602318-70602319(-) Y intron       16381836
chr8:70602333-70602334(-) Gm intron       16381836
chr8:70602357-70602358(-) Y intron       16381836
chr8:70602378-70602379(-) Gm intron       16381836
chr8:70602390-70602391(-) Cm intron       16381836
chr8:70602393-70602394(-) Y intron       16381836//25192136
chr8:70602408-70602409(-) Cm intron       16381836
chr8:70602410-70602411(-) Am intron       16381836
chr8:70602418-70602419(-) Gm intron       16381836
chr8:70602424-70602425(-) Y intron       16381836//25192136
chr8:70602426-70602427(-) Y intron       16381836//25192136
chr8:70602433-70602434(-) Y intron       16381836//25192136
chr8:70602436-70602437(-) Cm intron       16381836
chr8:70602447-70602448(-) Am intron       16381836
chr8:70602452-70602453(-) Am intron       16381836
chr8:70602455-70602456(-) Y intron       16381836//25192136
chr8:70602459-70602460(-) Um intron       16381836
chr8:70602459-70602460(-) Y intron       16381836//25192136
chr8:70602469-70602470(-) Cm intron       16381836
chr8:70602492-70602493(-) Am intron       16381836
chr8:70602507-70602508(-) Y intron       16381836
chr8:70602509-70602510(-) Y intron       16381836
chr8:70602517-70602518(-) Am intron       16381836
chr8:70602582-70602583(-) Y intron       16381836//25192136
chr8:70744018-70744019(-) m6A CDS//exon       -
chr8:70744053-70744054(-) m6A CDS//exon       22608085
chr8:70744147-70744148(-) m6A CDS//exon       22608085
chr8:70744302-70744303(-) m6A CDS//exon       -
chr8:70744375-70744376(-) m6A CDS//exon       22608085
chr8:70744598-70744599(-) m6A CDS//exon       27773536
chr8:70744609-70744610(-) m6A CDS//exon       27773536
chr8:70744627-70744628(-) m6A CDS//exon       27773536
chr8:70744814-70744815(-) m6A CDS//exon       25456834//22608085
chr8:70744890-70744891(-) m6A CDS//exon       25456834//24981863//22608085
chr8:70745002-70745003(-) m6A 5'UTR//exon       24209618//25456834//22608085
chr8:70745139-70745140(-) m6A 5'UTR//exon       25456834//27773536//22608085
chr8:70745317-70745318(-) m6A 5'UTR//exon       27773536
chr8:70745359-70745360(-) m6A 5'UTR//exon       -
chr8:70747095-70747096(-) m6A 5'UTR//exon       -
chr8:70747107-70747108(-) m6A 5'UTR//exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate EBER2
EBV-postitive Burkitt lymphoma-derived cell line (Raji) Cytoplasm     1332043
EBV-postitive Burkitt lymphoma-derived cell line (Raji) Nucleus     1332043
SLCO5A1
Chromatin HeLa-S3 cells     -
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: EBER2
Interactor2: SLCO5A1

Evidence Support:


Strong-Evidence ChIP
Weak-Evidence RNA-Seq
Support Database ViRBase

References:


PMID 30176159 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line BJAB-B1 lymphoma cells Interactor2 expression None
Description Table 1.EBER2-interacting host RNAs. Gene ID, genome coordinates, and raw read count at maximum peak height are shown.

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