Basic Information:

  VIRBase ID:  

VHID00276808

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL69:  MIMAT0029123          TOMM5:  NM_001134485     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL69	TOMM5
miRBase Accession/Entrez ID	MIMAT0029123	401505
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	bA613M10.3//C9orf105//Tom5

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TOMM5	chr9:37592030(-) A-I      intronic chr9:37590343(-) A-I      intronic chr9:37590336(-) A-I      intronic chr9:37590334(-) A-I      intronic chr9:37590198(-) A-I      intronic chr9:37590280(-) A-I      intronic chr9:37589687(-) A-I      intronic chr9:37589688(-) A-I      intronic chr9:37589675(-) A-I      intronic chr9:37590272(-) A-I      intronic chr9:37592052(-) A-I      intronic chr9:37592047(-) A-I      intronic chr9:37589659(-) A-I      intronic chr9:37589722(-) A-I      intronic chr9:37590257(-) A-I      intronic chr9:37590186(-) A-I      intronic chr9:37590187(-) A-I      intronic chr9:37590182(-) A-I      intronic chr9:37589673(-) A-I      intronic chr9:37591581(-) A-I      intronic chr9:37591677(-) A-I      intronic chr9:37591643(-) A-I      intronic chr9:37592031(-) A-I      intronic chr9:37592107(-) A-I      intronic chr9:37590185(-) A-I      intronic chr9:37590276(-) A-I      intronic chr9:37589667(-) A-I      intronic chr9:37589808(-) A-I      intronic chr9:37589732(-) A-I      intronic chr9:37589683(-) A-I      intronic chr9:37590377(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TOMM5	chr9:37589683(-) A-I intron -    15342557 chr9:37589737(-) A-I intron -    15342557 chr9:37589738(-) A-I intron -    15342557 chr9:37590187(-) A-I intron -    15342557 chr9:37590224(-) A-I intron -    15342557 chr9:37590317(-) A-I intron -    15342557 chr9:37590372(-) A-I intron -    15342557 chr9:37589737(-) A-G intron -    22484847 chr9:37589738(-) A-G intron -    22484847 chr9:37590187(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TOMM5	chr9:37582647-37582648(-) m6A 3'UTR       27773535 chr9:37582700-37582701(-) m6A 3'UTR       27773535 chr9:37582804-37582805(-) m6A 3'UTR       27773535 chr9:37582958-37582959(-) m6A 3'UTR       27773535 chr9:37582974-37582975(-) m6A 3'UTR       27773535 chr9:37583032-37583033(-) m6A 3'UTR       27773535 chr9:37583089-37583090(-) m6A 3'UTR       27773535 chr9:37588618-37588619(-) m6A 3'UTR//intron       27773535 chr9:37588719-37588720(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chr9:37588763-37588764(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr9:37588786-37588787(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr9:37588799-37588800(-) m6A 3'UTR//intron       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr9:37588886-37588887(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr9:37588891-37588892(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chr9:37588904-37588905(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr9:37592318-37592319(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//27371828//22608085 chr9:37592378-37592379(-) m6A CDS//intron       24284625//24209618//27773535//27371828//22575960 chr9:37592440-37592441(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr9:37592494-37592495(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085 chr9:37592620-37592621(-) m6A 5'UTR       24284625//24209618//25456834//24981863//27371828//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TOMM5	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL69
Interactor2: TOMM5

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg