Basic Information:

  VIRBase ID:  

VHID00275322

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL69:  MIMAT0029123          SLC25A38:  NM_017875     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL69	SLC25A38
miRBase Accession/Entrez ID	MIMAT0029123	54977
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SIDBA2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC25A38	chr3:39435070(+) A-I      intronic chr3:39435156(+) A-I      intronic chr3:39434657(+) A-I      intronic chr3:39426393(+) A-I      intronic chr3:39435218(+) A-I      intronic chr3:39428029(+) A-I      intronic chr3:39427890(+) A-I      intronic chr3:39435055(+) A-I      intronic chr3:39434615(+) A-I      intronic chr3:39428041(+) A-I      intronic chr3:39435164(+) A-I      intronic chr3:39426458(+) A-I      intronic chr3:39435010(+) A-I      intronic chr3:39437554(+) A-I      intronic chr3:39435014(+) A-I      intronic chr3:39434611(+) A-I      intronic chr3:39434656(+) A-I      intronic chr3:39434566(+) A-I      intronic chr3:39435130(+) A-I      intronic chr3:39434629(+) A-I      intronic chr3:39434520(+) A-I      intronic chr3:39435187(+) A-I      intronic chr3:39435050(+) A-I      intronic chr3:39427934(+) A-I      intronic chr3:39434673(+) A-I      intronic chr3:39434696(+) A-I      intronic chr3:39435132(+) A-I      intronic chr3:39435108(+) A-I      intronic chr3:39434599(+) A-I      intronic chr3:39435225(+) A-I      intronic chr3:39435179(+) A-I      intronic chr3:39435090(+) A-I      intronic chr3:39437550(+) A-I      intronic chr3:39427954(+) A-I      intronic chr3:39434705(+) A-I      intronic chr3:39436831(+) A-I      intronic chr3:39427918(+) A-I      intronic chr3:39435173(+) A-I      intronic chr3:39435199(+) A-I      intronic chr3:39435177(+) A-I      intronic chr3:39434662(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC25A38	chr3:39434696(+) A-I intron -    22327324 chr3:39435014(+) A-I intron -    22327324 chr3:39427901(+) G-A intron -    22484847 chr3:39434566(+) A-G intron -    22484847 chr3:39434599(+) A-G intron -    22484847 chr3:39434629(+) A-G intron -    22484847 chr3:39434696(+) A-G intron -    22484847 chr3:39434697(+) A-G intron -    22484847 chr3:39435014(+) A-G intron -    22484847 chr3:39435090(+) A-G intron -    22484847 chr3:39435091(+) A-G intron -    22484847 chr3:39435173(+) A-G intron -    22484847 chr3:39435179(+) A-G intron -    22484847 chr3:39435218(+) A-G intron -    22484847 chr3:39435225(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC25A38	chr3:39424900-39424901(+) m6A 5'UTR       24284625//25456834//24981863//22608085 chr3:39425034-39425035(+) m6A 5'UTR       24284625//25456834//24981863//22608085 chr3:39425049-39425050(+) m6A 5'UTR       24284625//25456834//24981863//22608085 chr3:39425195-39425196(+) m6A 5'UTR       24981863 chr3:39425225-39425226(+) m6A 5'UTR//CDS       24981863 chr3:39425264-39425265(+) m6A CDS       24981863 chr3:39437896-39437897(+) m6A CDS       22575960//22608085 chr3:39437942-39437943(+) m6A CDS       24209618//24981863//22575960//22608085 chr3:39438021-39438022(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr3:39438115-39438116(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr3:39438175-39438176(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22608085 chr3:39438432-39438433(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:39438472-39438473(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:39438503-39438504(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:39438561-39438562(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr3:39438687-39438688(+) m6A 3'UTR       27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC25A38	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL69
Interactor2: SLC25A38

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg