Basic Information:

  VIRBase ID:  

VHID00275052

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL69:  MIMAT0029123          NPTN:  NM_012428     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL69	NPTN
miRBase Accession/Entrez ID	MIMAT0029123	27020
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GP55//GP65//np55//np65//SDFR1//SDR1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NPTN	chr15:73866949(-) A-I      intronic chr15:73866902(-) A-I      intronic chr15:73866918(-) A-I      intronic chr15:73866950(-) A-I      intronic chr15:73874422(-) A-I      intronic chr15:73906138(-) A-I      intronic chr15:73906119(-) A-I      intronic chr15:73906094(-) A-I      intronic chr15:73902572(-) A-I      intronic chr15:73902566(-) A-I      intronic chr15:73902524(-) A-I      intronic chr15:73902506(-) A-I      intronic chr15:73901950(-) A-I      intronic chr15:73901889(-) A-I      intronic chr15:73901872(-) A-I      intronic chr15:73901860(-) A-I      intronic chr15:73901850(-) A-I      intronic chr15:73901807(-) A-I      intronic chr15:73867027(-) A-I      intronic chr15:73866886(-) A-I      intronic chr15:73901728(-) A-I      intronic chr15:73919525(-) A-I      intronic chr15:73916022(-) A-I      intronic chr15:73915952(-) A-I      intronic chr15:73906623(-) A-I      intronic chr15:73906195(-) A-I      intronic chr15:73919428(-) A-I      intronic chr15:73906617(-) A-I      intronic chr15:73901824(-) A-I      intronic chr15:73906566(-) A-I      intronic chr15:73906253(-) A-I      intronic chr15:73905077(-) A-I      intronic chr15:73902525(-) A-I      intronic chr15:73901800(-) A-I      intronic chr15:73902551(-) A-I      intronic chr15:73853897(-) A-I      intronic chr15:73902611(-) A-I      intronic chr15:73906545(-) A-I      intronic chr15:73882284(-) A-I      intronic chr15:73867543(-) A-I      intronic chr15:73917811(-) A-I      intronic chr15:73915946(-) A-I      intronic chr15:73906592(-) A-I      intronic chr15:73915880(-) A-I      intronic chr15:73919407(-) A-I      intronic chr15:73906164(-) A-I      intronic chr15:73904729(-) A-I      intronic chr15:73906585(-) A-I      intronic chr15:73866882(-) A-I      intronic chr15:73902592(-) A-I      intronic chr15:73866908(-) A-I      intronic chr15:73906159(-) A-I      intronic chr15:73906577(-) A-I      intronic chr15:73919464(-) A-I      intronic chr15:73906660(-) A-I      intronic chr15:73906628(-) A-I      intronic chr15:73919494(-) A-I      intronic chr15:73906615(-) A-I      intronic chr15:73906539(-) A-I      intronic chr15:73906579(-) A-I      intronic chr15:73919413(-) A-I      intronic chr15:73906254(-) A-I      intronic chr15:73906549(-) A-I      intronic chr15:73906299(-) A-I      intronic chr15:73866892(-) A-I      intronic chr15:73881555(-) A-I      intronic chr15:73917801(-) A-I      intronic chr15:73906306(-) A-I      intronic chr15:73882342(-) A-I      intronic chr15:73919393(-) A-I      intronic chr15:73901750(-) A-I      intronic chr15:73906165(-) A-I      intronic chr15:73906220(-) A-I      intronic chr15:73901936(-) A-I      intronic chr15:73919319(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NPTN	chr15:73852775-73852776(-) m6A 3'UTR       26404942 chr15:73852825-73852826(-) m6A 3'UTR       26404942 chr15:73853333-73853334(-) m6A 3'UTR//exon       26404942 chr15:73853371-73853372(-) m6A 3'UTR//exon       26404942 chr15:73854260-73854261(-) m6A 3'UTR//CDS//exon       24981863//26404942//27773535 chr15:73854275-73854276(-) m6A 3'UTR//CDS//exon       24981863//26404942//27773535 chr15:73854306-73854307(-) m6A CDS//exon       24981863//26404942//27773535 chr15:73855581-73855582(-) m6A CDS//exon       24981863//26404942//27773535 chr15:73855590-73855591(-) m6A CDS//exon//intron       24981863//26404942//27773535 chr15:73855608-73855609(-) m6A exon//intron       24981863//27773535 chr15:73855613-73855614(-) m6A exon//intron       24981863//27773535 chr15:73862675-73862676(-) m6A CDS//exon       26404942//27773535//27371828 chr15:73862688-73862689(-) Cm CDS//exon       - chr15:73862693-73862694(-) m6A CDS//exon       26404942//27773535//27371828 chr15:73862702-73862703(-) m6A CDS//exon       26404942//27773535//27371828 chr15:73866039-73866040(-) m6A CDS//exon       26404942//27773535//22575960 chr15:73866099-73866100(-) m6A CDS//exon       27773535 chr15:73884347-73884348(-) m6A CDS//exon//intron       26404942//27773535 chr15:73884364-73884365(-) m6A CDS//exon//intron       26404942//27773535 chr15:73884438-73884439(-) m6A CDS//exon//intron       27773535 chr15:73889412-73889413(-) m6A CDS//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NPTN	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL69
Interactor2: NPTN

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg