Basic Information:

  VIRBase ID:  

VHID00273877

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL69:  MIMAT0029123          OXCT1:  NR_157114     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL69	OXCT1
miRBase Accession/Entrez ID	MIMAT0029123	5019
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	OXCT//SCOT

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	OXCT1	chr5:41733477(-) A-I      intronic chr5:41733465(-) A-I      intronic chr5:41739778(-) A-I      intronic chr5:41741258(-) A-I      intronic chr5:41770112(-) A-I      intronic chr5:41770134(-) A-I      intronic chr5:41770129(-) A-I      intronic chr5:41741191(-) A-I      intronic chr5:41741177(-) A-I      intronic chr5:41739926(-) A-I      intronic chr5:41739910(-) A-I      intronic chr5:41739851(-) A-I      intronic chr5:41739825(-) A-I      intronic chr5:41733486(-) A-I      intronic chr5:41733481(-) A-I      intronic chr5:41769595(-) A-I      intronic chr5:41773505(-) A-I      intronic chr5:41739803(-) A-I      intronic chr5:41741250(-) A-I      intronic chr5:41782334(-) A-I      intronic chr5:41769607(-) A-I      intronic chr5:41741181(-) A-I      intronic chr5:41828252(-) A-I      intronic chr5:41822590(-) A-I      intronic chr5:41828316(-) A-I      intronic chr5:41741257(-) A-I      intronic chr5:41741190(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	OXCT1	chr5:41741190(-) A-G intron -    22484847 chr5:41741250(-) A-G intron -    22484847 chr5:41773505(-) A-G intron -    22484847 chr5:41838966(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	OXCT1	chr5:41730295-41730296(-) m6A 3'UTR       27773535 chr5:41731684-41731685(-) m6A 3'UTR//exon       27773535//22608085 chr5:41731703-41731704(-) m6A 3'UTR//exon       27773535//22608085 chr5:41731765-41731766(-) m6A 3'UTR//exon       27773535//22608085 chr5:41731788-41731789(-) m6A 3'UTR//exon       27773535//22608085 chr5:41731860-41731861(-) m6A CDS//exon       27773535 chr5:41794176-41794177(-) m6A 5'UTR//CDS//exon//intron       - chr5:41794225-41794226(-) m6A exon//intron       - chr5:41805735-41805736(-) m6A CDS//intron       - chr5:41842800-41842801(-) m6A CDS//exon       22575960 chr5:41843683-41843684(-) m6A 5'UTR//intron       27773535//22575960 chr5:41843701-41843702(-) m6A 5'UTR//intron       27773535//22575960 chr5:41850208-41850209(-) m6A CDS       22575960 chr5:41870445-41870446(-) m6A CDS       27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	OXCT1	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL69
Interactor2: OXCT1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg