Basic Information:

  VIRBase ID:  

VHID00273082

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL59:  MIMAT0029122          SPDYE3:  NM_001004351     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL59	SPDYE3
miRBase Accession/Entrez ID	MIMAT0029122	441272
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SPDYB2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SPDYE3	chr7:99911898(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SPDYE3	chr7:99916870(+) A-I intron -    22327324 chr7:99917749(+) C-G intron -    21725310 chr7:99906164(+) T-C intron -    22484847 chr7:99906166(+) T-C intron -    22484847 chr7:99906175(+) T-C intron -    22484847 chr7:99907359(+) A-G intron -    22484847 chr7:99911898(+) A-G intron -    22484847 chr7:99913754(+) T-C intron -    22484847 chr7:99913866(+) T-C intron -    22484847 chr7:99913867(+) T-C intron -    22484847 chr7:99913886(+) T-C intron -    22484847 chr7:99914037(+) T-C intron -    22484847 chr7:99914984(+) T-C intron -    22484847 chr7:99915026(+) T-C intron -    22484847 chr7:99915128(+) T-C intron -    22484847 chr7:99915145(+) T-C intron -    22484847 chr7:99915176(+) T-C intron -    22484847 chr7:99915399(+) T-C intron -    22484847 chr7:99915415(+) T-C intron -    22484847 chr7:99916728(+) T-C intron -    22484847 chr7:99916761(+) T-C intron -    22484847 chr7:99916780(+) T-C intron -    22484847 chr7:99917865(+) T-C intron -    22484847 chr7:99917927(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SPDYE3	chr7:99917229-99917230(+) m6A CDS//exon       24981863//27773535 chr7:99917260-99917261(+) m6A CDS//exon       24981863//27773535 chr7:99917318-99917319(+) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085 chr7:99917336-99917337(+) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085 chr7:99917623-99917624(+) m6A 3'UTR//exon       25456834//27371828 chr7:99917930-99917931(+) m6A exon//intron       24981863//27773535 chr7:99918075-99918076(+) m6A exon//intron       24284625//24981863//27773535//22608085 chr7:99918116-99918117(+) m6A exon//intron       24284625//25456834//24981863//27773535//22608085 chr7:99918147-99918148(+) m6A exon//intron       24284625//25456834//24981863//27773535//22608085 chr7:99918193-99918194(+) m6A exon//intron       24284625//25456834//24981863//27773535//22608085 chr7:99918253-99918254(+) m6A exon//intron       24284625//24981863//27773535//22608085 chr7:99918353-99918354(+) m6A exon//intron       24981863//27773535//22608085 chr7:99918423-99918424(+) m6A exon//intron       24981863//27773535 chr7:99918434-99918435(+) m6A exon//intron       24981863//27773535 chr7:99918514-99918515(+) m6A 3'UTR//exon       24981863//27773535 chr7:99918521-99918522(+) m6A 3'UTR//exon       24981863//27773535 chr7:99918551-99918552(+) m6A 3'UTR//exon       24981863//27773535 chr7:99918575-99918576(+) m6A 3'UTR//exon       24981863//27773535 chr7:99918622-99918623(+) m6A 3'UTR//exon       27773535 chr7:99918628-99918629(+) m6A 3'UTR//exon       27773535 chr7:99919039-99919040(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SPDYE3	Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL59
Interactor2: SPDYE3

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg