Basic Information:

  VIRBase ID:  

VHID00271761

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL59:  MIMAT0029122          BRCC3:  NM_024332     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL59	BRCC3
miRBase Accession/Entrez ID	MIMAT0029122	79184
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BRCC36//C6.1A//CXorf53

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	BRCC3	chrX:154334050(+) A-I      intronic chrX:154304525(+) A-I      intronic chrX:154304488(+) A-I      intronic chrX:154300976(+) A-I      intronic chrX:154334154(+) A-I      intronic chrX:154334148(+) A-I      intronic chrX:154333607(+) A-I      intronic chrX:154300971(+) A-I      intronic chrX:154300937(+) A-I      intronic chrX:154300862(+) A-I      intronic chrX:154333611(+) A-I      intronic chrX:154301043(+) A-I      intronic chrX:154300994(+) A-I      intronic chrX:154333637(+) A-I      intronic chrX:154333660(+) A-I      intronic chrX:154334073(+) A-I      intronic chrX:154334106(+) A-I      intronic chrX:154334110(+) A-I      intronic chrX:154334163(+) A-I      intronic chrX:154333602(+) A-I      intronic chrX:154334131(+) A-I      intronic chrX:154323712(+) A-I      intronic chrX:154300930(+) A-I      intronic chrX:154323705(+) A-I      intronic chrX:154313202(+) A-I      intronic chrX:154313098(+) A-I      intronic chrX:154333560(+) A-I      intronic chrX:154312845(+) A-I      intronic chrX:154312837(+) A-I      intronic chrX:154312767(+) A-I      intronic chrX:154312755(+) A-I      intronic chrX:154312699(+) A-I      intronic chrX:154312661(+) A-I      intronic chrX:154304589(+) A-I      intronic chrX:154304585(+) A-I      intronic chrX:154304430(+) A-I      intronic chrX:154333596(+) A-I      intronic chrX:154333598(+) A-I      intronic chrX:154319664(+) A-I      intronic chrX:154334103(+) A-I      intronic chrX:154334053(+) A-I      intronic chrX:154334184(+) A-I      intronic chrX:154333582(+) A-I      intronic chrX:154334074(+) A-I      intronic chrX:154334113(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	BRCC3	chrX:154333476(+) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BRCC3	chrX:154299760-154299761(+) m6A 5'UTR       24981863 chrX:154348406-154348407(+) m6A 3'UTR//CDS       24209618//24981863//22608085 chrX:154348433-154348434(+) m6A 3'UTR       24209618//24981863//27773535//22608085 chrX:154349556-154349557(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:154349565-154349566(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:154349587-154349588(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154349635-154349636(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154349656-154349657(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154349668-154349669(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154349680-154349681(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154349776-154349777(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:154349801-154349802(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:154349813-154349814(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:154349855-154349856(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:154349875-154349876(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:154349945-154349946(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chrX:154349974-154349975(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chrX:154349993-154349994(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chrX:154350012-154350013(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chrX:154350066-154350067(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chrX:154350109-154350110(+) m6A 3'UTR       24209618//24981863//22608085 chrX:154350202-154350203(+) m6A 3'UTR       24981863//22608085 chrX:154350423-154350424(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chrX:154350437-154350438(+) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chrX:154350468-154350469(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:154350475-154350476(+) Y 3'UTR       26075521 chrX:154350533-154350534(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154350565-154350566(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154350645-154350646(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:154350730-154350731(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chrX:154350753-154350754(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chrX:154350760-154350761(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chrX:154350781-154350782(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chrX:154350804-154350805(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chrX:154350861-154350862(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154350868-154350869(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154350903-154350904(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154350907-154350908(+) m6A 3'UTR       27773535 chrX:154350947-154350948(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154350966-154350967(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154350997-154350998(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154351008-154351009(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chrX:154351086-154351087(+) m6A 3'UTR       24284625//24981863//27773535//22575960//22608085 chrX:154351113-154351114(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chrX:154351181-154351182(+) m6A 3'UTR       24981863//22608085 chrX:154351276-154351277(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	BRCC3	Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL59
Interactor2: BRCC3

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg