Detail Information

Basic Information:


  VIRBase ID:  

VHID00269377

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL59:           NDUFA10:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL59 NDUFA10
miRBase
Accession/Entrez ID		 MIMAT0029122 4705
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CI-42k//CI-42KD//MC1DN22

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NDUFA10
chr2:240942405(-) A-I      intronic
chr2:240941564(-) A-I      intronic
chr2:240942369(-) A-I      intronic
chr2:240942395(-) A-I      intronic
chr2:240941666(-) A-I      intronic
chr2:240941624(-) A-I      intronic
chr2:240942522(-) A-I      intronic
chr2:240913436(-) A-I      intronic
chr2:240923393(-) A-I      intronic
chr2:240942431(-) A-I      intronic
chr2:240942466(-) A-I      intronic
chr2:240942383(-) A-I      intronic
chr2:240942329(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NDUFA10
chr2:240898052(-) A-I exon 3'UTR    21960545
chr2:240923663(-) G-T intron -    22484847
chr2:240941624(-) A-G intron -    22484847
chr2:240941636(-) A-G intron -    22484847
chr2:240941648(-) A-G intron -    22484847
chr2:240941666(-) A-G intron -    22484847
chr2:240942369(-) A-G intron -    22484847
chr2:240942466(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NDUFA10
chr2:240897167-240897168(-) m6A 3'UTR//intron       24284625
chr2:240897212-240897213(-) m6A 3'UTR//intron       24284625//25456834//22608085
chr2:240897347-240897348(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085
chr2:240897424-240897425(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr2:240897900-240897901(-) m6A 3'UTR//intron       24284625//25456834
chr2:240897908-240897909(-) m6A 3'UTR//intron       24284625//25456834
chr2:240897937-240897938(-) m6A 3'UTR//intron       24284625//25456834
chr2:240897948-240897949(-) m6A 3'UTR//intron       24284625//25456834//24981863
chr2:240897981-240897982(-) m6A 3'UTR//exon//intron       25456834//24981863
chr2:240898947-240898948(-) m6A 3'UTR//intron       27773535
chr2:240900556-240900557(-) m6A CDS//exon//intron       22575960
chr2:240908876-240908877(-) m6A 3'UTR//intron       -
chr2:240909042-240909043(-) m6A 3'UTR//intron       25456834//27773535//27371828
chr2:240909055-240909056(-) m6A 3'UTR//intron       25456834//27773535//27371828
chr2:240909121-240909122(-) m6A CDS//intron       27773535//27371828
chr2:240951408-240951409(-) m6A exon//intron       27773535
chr2:240951417-240951418(-) m6A exon//intron       27773535
chr2:240951480-240951481(-) m6A exon//intron       27773535//27371828
chr2:240951491-240951492(-) m6A exon//intron       27773535//27371828
chr2:240951676-240951677(-) m6A exon//intron       27773535
chr2:240951701-240951702(-) m6A exon//intron       27773535
chr2:240951729-240951730(-) m6A exon//intron       27773535
chr2:240952857-240952858(-) m6A exon//intron       27773535
chr2:240952894-240952895(-) m6A exon//intron       27773535
chr2:240952903-240952904(-) m6A exon//intron       27773535
chr2:240952935-240952936(-) m6A exon//intron       27773535
chr2:240952963-240952964(-) m6A exon//intron       27773535
chr2:240952973-240952974(-) m6A exon//intron       27773535
chr2:240954270-240954271(-) m6A 3'UTR//CDS//exon//intron       27773535
chr2:240961616-240961617(-) m6A CDS//exon//intron       24981863
chr2:240961676-240961677(-) m6A CDS//exon//intron       24981863
chr2:240961727-240961728(-) m6A CDS//exon//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NDUFA10
Chromatin HCC cell line (HepG2)|K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL59
Interactor2: NDUFA10

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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