Basic Information:

  VIRBase ID:  

VHID00267358

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US29-5p:  MIMAT0028167          LHFPL3:  NM_199000     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US29-5p	LHFPL3
miRBase Accession/Entrez ID	MIMAT0028167	375612
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LHFPL4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LHFPL3	chr7:104040432(+) A-I      intronic chr7:104040437(+) A-I      intronic chr7:104041650(+) A-I      intronic chr7:104041652(+) A-I      intronic chr7:104041668(+) A-I      intronic chr7:104041705(+) A-I      intronic chr7:104050706(+) A-I      intronic chr7:104015513(+) A-I      intronic chr7:104041643(+) A-I      intronic chr7:104120060(+) A-I      intronic chr7:104050723(+) A-I      intronic chr7:104050707(+) A-I      intronic chr7:104040497(+) A-I      intronic chr7:104040441(+) A-I      intronic chr7:104487979(+) A-I      intronic chr7:104255323(+) A-I      intronic chr7:104061217(+) A-I      intronic chr7:104479996(+) A-I      intronic chr7:104049957(+) A-I      intronic chr7:104159127(+) A-I      intronic chr7:104115004(+) A-I      intronic chr7:104040491(+) A-I      intronic chr7:104058859(+) A-I      intronic chr7:104528856(+) A-I      intronic chr7:104453046(+) A-I      intronic chr7:104050843(+) A-I      intronic chr7:104014746(+) A-I      intronic chr7:104027846(+) A-I      intronic chr7:104453176(+) A-I      intronic chr7:104050855(+) A-I      intronic chr7:104166085(+) A-I      intronic chr7:104039990(+) A-I      intronic chr7:103988657(+) A-I      intronic chr7:103979641(+) A-I      intronic chr7:104058837(+) A-I      intronic chr7:104014743(+) A-I      intronic chr7:103972333(+) A-I      intronic chr7:104115059(+) A-I      intronic chr7:104058818(+) A-I      intronic chr7:104040353(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LHFPL3	chr7:104308742(+) A-I intron -    22327324 chr7:104489457(+) T-C intron -    22484847 chr7:104489529(+) T-C intron -    22484847 chr7:104489542(+) T-C intron -    22484847 chr7:104490532(+) T-C intron -    22484847 chr7:104512672(+) T-C intron -    22484847 chr7:104512737(+) T-C intron -    22484847 chr7:104514966(+) T-C intron -    22484847 chr7:104515362(+) T-C intron -    22484847 chr7:104518419(+) T-C intron -    22484847 chr7:104519741(+) T-C intron -    22484847 chr7:104519810(+) T-C intron -    22484847 chr7:104519857(+) T-C intron -    22484847 chr7:104520047(+) T-C intron -    22484847 chr7:104528793(+) T-C intron -    22484847 chr7:104528925(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LHFPL3	chr7:104308976-104308977(+) m6A intron       - chr7:104546790-104546791(+) m6A 3'UTR       - chr7:104546801-104546802(+) m6A 3'UTR       - chr7:104546885-104546886(+) m6A 3'UTR       - chr7:104546902-104546903(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LHFPL3	Cytosol K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US29-5p
Interactor2: LHFPL3

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg