Detail Information

Basic Information:


  VIRBase ID:  

VHID00266769

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US29-5p:           THOC7:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US29-5p THOC7
miRBase
Accession/Entrez ID		 MIMAT0028167 80145
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - fSAP24//hTREX30//NIF3L1BP1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR THOC7
chr3:63838776(-) A-I      intronic
chr3:63847713(-) A-I      intronic
chr3:63829332(-) A-I      intronic
chr3:63836395(-) A-I      intronic
chr3:63834952(-) A-I      intronic
chr3:63836407(-) A-I      intronic
chr3:63836436(-) A-I      intronic
chr3:63836439(-) A-I      intronic
chr3:63836440(-) A-I      intronic
chr3:63824621(-) A-I      intronic
chr3:63829021(-) A-I      intronic
chr3:63828982(-) A-I      intronic
chr3:63828967(-) A-I      intronic
chr3:63828916(-) A-I      intronic
chr3:63828905(-) A-I      intronic
chr3:63828750(-) A-I      intronic
chr3:63828680(-) A-I      intronic
chr3:63828677(-) A-I      intronic
chr3:63828668(-) A-I      intronic
chr3:63828534(-) A-I      intronic
chr3:63828530(-) A-I      intronic
chr3:63828520(-) A-I      intronic
chr3:63824822(-) A-I      intronic
chr3:63836339(-) A-I      intronic
chr3:63824616(-) A-I      intronic
chr3:63836348(-) A-I      intronic
chr3:63836368(-) A-I      intronic
chr3:63836388(-) A-I      intronic
chr3:63836391(-) A-I      intronic
chr3:63836431(-) A-I      intronic
chr3:63836450(-) A-I      intronic
chr3:63836469(-) A-I      intronic
chr3:63836475(-) A-I      intronic
chr3:63836310(-) A-I      intronic
chr3:63836278(-) A-I      intronic
chr3:63835942(-) A-I      intronic
chr3:63834924(-) A-I      intronic
chr3:63834915(-) A-I      intronic
chr3:63834906(-) A-I      intronic
chr3:63834895(-) A-I      intronic
chr3:63834891(-) A-I      intronic
chr3:63834871(-) A-I      intronic
chr3:63833301(-) A-I      intronic
chr3:63833294(-) A-I      intronic
chr3:63833273(-) A-I      intronic
chr3:63838582(-) A-I      intronic
chr3:63838605(-) A-I      intronic
chr3:63833247(-) A-I      intronic
chr3:63833244(-) A-I      intronic
chr3:63833221(-) A-I      intronic
chr3:63833203(-) A-I      intronic
chr3:63833197(-) A-I      intronic
chr3:63833196(-) A-I      intronic
chr3:63832362(-) A-I      intronic
chr3:63832279(-) A-I      intronic
chr3:63832259(-) A-I      intronic
chr3:63838718(-) A-I      intronic
chr3:63838745(-) A-I      intronic
chr3:63832216(-) A-I      intronic
chr3:63832199(-) A-I      intronic
chr3:63832176(-) A-I      intronic
chr3:63832111(-) A-I      intronic
chr3:63829551(-) A-I      intronic
chr3:63829403(-) A-I      intronic
chr3:63829347(-) A-I      intronic
chr3:63836400(-) A-I      intronic
chr3:63846011(-) A-I      intronic
chr3:63838770(-) A-I      intronic
chr3:63839395(-) A-I      intronic
chr3:63826184(-) A-I      intronic
chr3:63836509(-) A-I      intronic
chr3:63834940(-) A-I      intronic
chr3:63836041(-) A-I      intronic
chr3:63828997(-) A-I      intronic
chr3:63836519(-) A-I      intronic
chr3:63838635(-) A-I      intronic
chr3:63834820(-) A-I      intronic
chr3:63838740(-) A-I      intronic
chr3:63836470(-) A-I      intronic
chr3:63833291(-) A-I      intronic
chr3:63836277(-) A-I      intronic
chr3:63828887(-) A-I      intronic
chr3:63838744(-) A-I      intronic
chr3:63834819(-) A-I      intronic
chr3:63833407(-) A-I      intronic
chr3:63833409(-) A-I      intronic
chr3:63836529(-) A-I      intronic
chr3:63835973(-) A-I      intronic
chr3:63838664(-) A-I      intronic
chr3:63838705(-) A-I      intronic
chr3:63835022(-) A-I      intronic
chr3:63834900(-) A-I      intronic
chr3:63833313(-) A-I      intronic
chr3:63838741(-) A-I      intronic
chr3:63836017(-) A-I      intronic
chr3:63828550(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED THOC7
chr3:63836017(-) A-G intron -    22484847
chr3:63836041(-) A-G intron -    22484847
chr3:63836400(-) A-G intron -    22484847
chr3:63836427(-) A-G intron -    22484847
chr3:63836433(-) A-G intron -    22484847
chr3:63836519(-) A-G intron -    22484847
chr3:63838705(-) A-G intron -    22484847
chr3:63838740(-) A-G intron -    22484847
chr3:63838741(-) A-G intron -    22484847
chr3:63838744(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase THOC7
chr3:63820881-63820882(-) m6A 3'UTR//CDS//exon       24981863
chr3:63821062-63821063(-) m6A 3'UTR//CDS//exon       24981863
chr3:63821983-63821984(-) m6A 3'UTR//CDS//exon       24981863
chr3:63821994-63821995(-) m6A 3'UTR//CDS//exon       24981863
chr3:63824113-63824114(-) m6A 3'UTR//CDS//exon       27773535
chr3:63849228-63849229(-) m6A exon//intron       -
chr3:63849358-63849359(-) m6A exon//intron       27773536
chr3:63849387-63849388(-) m6A exon//intron       24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate THOC7
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US29-5p
Interactor2: THOC7

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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