Detail Information

Basic Information:


  VIRBase ID:  

VHID00266168

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US29-5p:           LMOD1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US29-5p LMOD1
miRBase
Accession/Entrez ID		 MIMAT0028167 25802
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - 1D//64kD//D1//SM-LMOD//SMLMOD

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LMOD1
chr1:201898059(-) A-I      intronic
chr1:201904239(-) A-I      intronic
chr1:201904240(-) A-I      intronic
chr1:201904241(-) A-I      intronic
chr1:201904249(-) A-I      intronic
chr1:201904252(-) A-I      intronic
chr1:201904450(-) A-I      intronic
chr1:201898013(-) A-I      intronic
chr1:201898008(-) A-I      intronic
chr1:201895108(-) A-I      intronic
chr1:201895069(-) A-I      intronic
chr1:201894997(-) A-I      intronic
chr1:201894993(-) A-I      intronic
chr1:201894979(-) A-I      intronic
chr1:201894961(-) A-I      intronic
chr1:201885154(-) A-I      intronic
chr1:201894952(-) A-I      intronic
chr1:201904232(-) A-I      intronic
chr1:201893963(-) A-I      intronic
chr1:201893956(-) A-I      intronic
chr1:201892941(-) A-I      intronic
chr1:201892898(-) A-I      intronic
chr1:201904448(-) A-I      intronic
chr1:201892880(-) A-I      intronic
chr1:201885580(-) A-I      intronic
chr1:201904422(-) A-I      intronic
chr1:201885534(-) A-I      intronic
chr1:201885526(-) A-I      intronic
chr1:201904439(-) A-I      intronic
chr1:201885520(-) A-I      intronic
chr1:201885170(-) A-I      intronic
chr1:201879712(-) A-I      intronic
chr1:201904438(-) A-I      intronic
chr1:201897998(-) A-I      intronic
chr1:201904233(-) A-I      intronic
chr1:201904430(-) A-I      intronic
chr1:201885145(-) A-I      intronic
chr1:201904427(-) A-I      intronic
chr1:201904415(-) A-I      intronic
chr1:201879676(-) A-I      intronic
chr1:201879679(-) A-I      intronic
chr1:201879684(-) A-I      intronic
chr1:201879685(-) A-I      intronic
chr1:201879693(-) A-I      intronic
chr1:201879959(-) A-I      intronic
chr1:201879979(-) A-I      intronic
chr1:201879998(-) A-I      intronic
chr1:201880020(-) A-I      intronic
chr1:201885119(-) A-I      intronic
chr1:201885130(-) A-I      intronic
chr1:201909542(-) A-I      intronic
chr1:201904408(-) A-I      intronic
chr1:201904373(-) A-I      intronic
chr1:201904269(-) A-I      intronic
chr1:201904263(-) A-I      intronic
chr1:201904262(-) A-I      intronic
chr1:201904235(-) A-I      intronic
chr1:201904255(-) A-I      intronic
chr1:201906709(-) A-I      intronic
chr1:201906649(-) A-I      intronic
chr1:201905873(-) A-I      intronic
chr1:201905108(-) A-I      intronic
chr1:201905094(-) A-I      intronic
chr1:201905079(-) A-I      intronic
chr1:201905076(-) A-I      intronic
chr1:201879918(-) A-I      intronic
chr1:201906729(-) A-I      intronic
chr1:201906811(-) A-I      intronic
chr1:201907369(-) A-I      intronic
chr1:201879470(-) A-I      intronic
chr1:201905808(-) A-I      intronic
chr1:201879991(-) A-I      intronic
chr1:201879509(-) A-I      intronic
chr1:201905882(-) A-I      intronic
chr1:201875937(-) A-I      intronic
chr1:201873565(-) A-I      intronic
chr1:201879526(-) A-I      intronic
chr1:201907395(-) A-I      intronic
chr1:201888213(-) A-I      intronic
chr1:201879975(-) A-I      intronic
chr1:201879968(-) A-I      intronic
chr1:201907524(-) A-I      intronic
chr1:201879955(-) A-I      intronic
chr1:201909407(-) A-I      intronic
chr1:201879994(-) A-I      intronic
chr1:201909346(-) A-I      intronic
chr1:201879703(-) A-I      intronic
chr1:201880015(-) A-I      intronic
chr1:201909351(-) A-I      intronic
chr1:201873539(-) A-I      intronic
chr1:201880636(-) A-I      intronic
chr1:201873507(-) A-I      intronic
chr1:201888214(-) A-I      intronic
chr1:201873431(-) A-I      intronic
chr1:201880645(-) A-I      intronic
chr1:201888217(-) A-I      intronic
chr1:201905885(-) A-I      intronic
chr1:201880681(-) A-I      intronic
chr1:201871802(-) A-I      intronic
chr1:201910352(-) A-I      intronic
chr1:201871793(-) A-I      intronic
chr1:201905899(-) A-I      intronic
chr1:201871776(-) A-I      intronic
chr1:201888578(-) A-I      intronic
chr1:201888582(-) A-I      intronic
chr1:201888583(-) A-I      intronic
chr1:201885247(-) A-I      intronic
chr1:201885241(-) A-I      intronic
chr1:201905924(-) A-I      intronic
chr1:201885224(-) A-I      intronic
chr1:201888605(-) A-I      intronic
chr1:201870518(-) A-I      intronic
chr1:201889175(-) A-I      intronic
chr1:201885249(-) A-I      intronic
chr1:201870548(-) A-I      intronic
chr1:201889256(-) A-I      intronic
chr1:201905933(-) A-I      intronic
chr1:201889351(-) A-I      intronic
chr1:201905968(-) A-I      intronic
chr1:201889352(-) A-I      intronic
chr1:201892000(-) A-I      intronic
chr1:201892881(-) A-I      intronic
chr1:201906034(-) A-I      intronic
chr1:201909824(-) A-I      intronic
chr1:201888231(-) A-I      intronic
chr1:201880693(-) A-I      intronic
chr1:201893960(-) A-I      intronic
chr1:201871699(-) A-I      intronic
chr1:201906492(-) A-I      intronic
chr1:201909818(-) A-I      intronic
chr1:201906657(-) A-I      intronic
chr1:201885184(-) A-I      intronic
chr1:201885181(-) A-I      intronic
chr1:201870554(-) A-I      intronic
chr1:201906662(-) A-I      intronic
chr1:201871605(-) A-I      intronic
chr1:201893974(-) A-I      intronic
chr1:201909815(-) A-I      intronic
chr1:201879668(-) A-I      intronic
chr1:201910094(-) A-I      intronic
chr1:201893967(-) A-I      intronic
chr1:201870430(-) A-I      intronic
chr1:201871660(-) A-I      intronic
chr1:201885178(-) A-I      intronic
chr1:201885450(-) A-I      intronic
chr1:201894007(-) A-I      intronic
chr1:201894126(-) A-I      intronic
chr1:201894161(-) A-I      intronic
chr1:201898047(-) A-I      intronic
chr1:201885476(-) A-I      intronic
chr1:201885174(-) A-I      intronic
chr1:201909580(-) A-I      intronic
chr1:201898113(-) A-I      intronic
chr1:201871671(-) A-I      intronic
chr1:201882000(-) A-I      intronic
chr1:201881904(-) A-I      intronic
chr1:201898423(-) A-I      intronic
chr1:201871677(-) A-I      intronic
chr1:201910357(-) A-I      intronic
chr1:201871686(-) A-I      intronic
chr1:201898441(-) A-I      intronic
chr1:201909511(-) A-I      intronic
chr1:201909497(-) A-I      intronic
chr1:201910322(-) A-I      intronic
chr1:201898447(-) A-I      intronic
chr1:201885605(-) A-I      intronic
chr1:201906675(-) A-I      intronic
chr1:201881742(-) A-I      intronic
chr1:201880731(-) A-I      intronic
chr1:201880730(-) A-I      intronic
chr1:201898456(-) A-I      intronic
chr1:201904747(-) A-I      intronic
chr1:201904849(-) A-I      intronic
chr1:201905011(-) A-I      intronic
chr1:201870398(-) A-I      intronic
chr1:201910333(-) A-I      intronic
chr1:201910341(-) A-I      intronic
chr1:201905061(-) A-I      intronic
chr1:201888604(-) A-I      intronic
chr1:201871629(-) A-I      intronic
chr1:201879691(-) A-I      intronic
chr1:201889392(-) A-I      intronic
chr1:201895114(-) A-I      intronic
chr1:201900519(-) A-I      intronic
chr1:201871204(-) A-I      intronic
chr1:201888159(-) A-I      intronic
chr1:201892734(-) A-I      intronic
chr1:201880514(-) A-I      intronic
chr1:201892728(-) A-I      intronic
chr1:201893982(-) A-I      intronic
chr1:201870370(-) A-I      intronic
chr1:201871152(-) A-I      intronic
chr1:201906853(-) A-I      intronic
chr1:201892795(-) A-I      intronic
chr1:201905981(-) A-I      intronic
chr1:201909541(-) A-I      intronic
chr1:201906674(-) A-I      intronic
chr1:201905839(-) A-I      intronic
chr1:201871181(-) A-I      intronic
chr1:201871211(-) A-I      intronic
chr1:201879961(-) A-I      intronic
chr1:201885530(-) A-I      intronic
chr1:201895948(-) A-I      intronic
chr1:201893961(-) A-I      intronic
chr1:201906566(-) A-I      intronic
chr1:201906762(-) A-I      intronic
chr1:201909761(-) A-I      intronic
chr1:201885599(-) A-I      intronic
chr1:201885108(-) A-I      intronic
chr1:201906475(-) A-I      intronic
chr1:201871845(-) A-I      intronic
chr1:201889366(-) A-I      intronic
chr1:201894864(-) A-I      intronic
chr1:201889255(-) A-I      intronic
chr1:201909453(-) A-I      intronic
chr1:201885462(-) A-I      intronic
chr1:201879988(-) A-I      intronic
chr1:201892918(-) A-I      intronic
chr1:201910366(-) A-I      intronic
chr1:201909585(-) A-I      intronic
chr1:201906569(-) A-I      intronic
chr1:201885135(-) A-I      intronic
chr1:201880762(-) A-I      intronic
chr1:201907323(-) A-I      intronic
chr1:201879625(-) A-I      intronic
chr1:201906451(-) A-I      intronic
chr1:201880613(-) A-I      intronic
chr1:201879636(-) A-I      intronic
chr1:201901758(-) A-I      intronic
chr1:201906054(-) A-I      intronic
chr1:201905992(-) A-I      intronic
chr1:201879444(-) A-I      intronic
chr1:201906772(-) A-I      intronic
chr1:201909955(-) A-I      intronic
chr1:201879652(-) A-I      intronic
chr1:201909345(-) A-I      intronic
chr1:201880724(-) A-I      intronic
chr1:201910364(-) A-I      intronic
chr1:201907456(-) A-I      intronic
chr1:201906561(-) A-I      intronic
chr1:201894935(-) A-I      intronic
chr1:201879658(-) A-I      intronic
chr1:201889391(-) A-I      intronic
chr1:201885083(-) A-I      intronic
chr1:201879540(-) A-I      intronic
chr1:201893902(-) A-I      intronic
chr1:201892146(-) A-I      intronic
chr1:201906021(-) A-I      intronic
chr1:201871829(-) A-I      intronic
chr1:201898299(-) A-I      intronic
chr1:201882477(-) A-I      intronic
chr1:201904228(-) A-I      intronic
chr1:201900497(-) A-I      intronic
chr1:201900500(-) A-I      intronic
chr1:201885222(-) A-I      intronic
chr1:201895121(-) A-I      intronic
chr1:201889284(-) A-I      intronic
chr1:201906888(-) A-I      intronic
chr1:201888075(-) A-I      intronic
chr1:201905820(-) A-I      intronic
chr1:201898505(-) A-I      intronic
chr1:201905946(-) A-I      intronic
chr1:201871846(-) A-I      intronic
chr1:201906775(-) A-I      intronic
chr1:201909586(-) A-I      intronic
chr1:201906459(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LMOD1
chr1:201866591-201866592(-) m6A 3'UTR       25456834
chr1:201866605-201866606(-) m6A 3'UTR       25456834
chr1:201866855-201866856(-) m6A 3'UTR       25456834//24981863
chr1:201866880-201866881(-) m6A 3'UTR       25456834//24981863
chr1:201866895-201866896(-) m6A 3'UTR       25456834//24981863
chr1:201866909-201866910(-) m6A 3'UTR       25456834//24981863
chr1:201867430-201867431(-) m6A 3'UTR       25456834//24981863
chr1:201867497-201867498(-) m6A 3'UTR       25456834//24981863//22608085
chr1:201867511-201867512(-) m6A CDS       25456834//24981863//22608085
chr1:201868494-201868495(-) m6A CDS       25456834//27773536
chr1:201868572-201868573(-) m6A CDS//intron       25456834//24981863//27773536//22608085
chr1:201868610-201868611(-) m6A CDS//intron       25456834//24981863//27773536//22608085
chr1:201868715-201868716(-) m6A CDS//intron       25456834//24981863//27773536//22608085
chr1:201868725-201868726(-) m6A CDS//intron       25456834//24981863//27773536//22608085
chr1:201868899-201868900(-) m6A CDS//intron       25456834//24981863//27773536
chr1:201868956-201868957(-) m6A CDS//intron       27773536
chr1:201868978-201868979(-) m6A CDS//intron       27773536
chr1:201869118-201869119(-) m6A CDS//intron       24981863
chr1:201869160-201869161(-) m6A CDS//intron       24981863
chr1:201869225-201869226(-) m6A CDS//intron       24981863//22608085
chr1:201869261-201869262(-) m6A CDS//intron       24981863//22608085
chr1:201869272-201869273(-) m6A CDS//intron       24981863//22608085
chr1:201869278-201869279(-) m6A CDS//intron       24981863//22608085
chr1:201869315-201869316(-) m6A CDS//intron       25456834//24981863//22608085
chr1:201869352-201869353(-) m6A CDS//intron       25456834//24981863//22608085
chr1:201869358-201869359(-) m6A CDS//intron       25456834//24981863//22608085
chr1:201869365-201869366(-) m6A CDS//intron       25456834//24981863//22608085
chr1:201869400-201869401(-) m6A CDS//intron       25456834//24981863//22608085
chr1:201869406-201869407(-) m6A CDS//intron       25456834//24981863//22608085
chr1:201869448-201869449(-) m6A CDS//intron       25456834//24981863//22608085
chr1:201869454-201869455(-) m6A CDS//intron       25456834//24981863//22608085
chr1:201869532-201869533(-) m6A CDS       25456834//24981863//22608085
chr1:201869550-201869551(-) m6A CDS       25456834//24981863//22608085
chr1:201869730-201869731(-) m6A CDS       25456834//24981863//22608085
chr1:201869787-201869788(-) m6A CDS       25456834//24981863//22608085
chr1:201869854-201869855(-) m6A CDS       25456834//24981863//27773536//22608085
chr1:201869860-201869861(-) m6A CDS       25456834//24981863//27773536//22608085
chr1:201915234-201915235(-) m6A CDS       25456834//24981863//27773536//22608085
chr1:201915242-201915243(-) m6A CDS       25456834//24981863//27773536//22608085
chr1:201915297-201915298(-) m6A CDS       25456834//24981863//27773536//22608085
chr1:201915310-201915311(-) m6A CDS       25456834//24981863//27773536//22608085
chr1:201915349-201915350(-) m6A CDS       24981863//27773536//22608085
chr1:201915401-201915402(-) m6A 5'UTR//CDS       24981863//27773536//22608085
chr1:201915427-201915428(-) m6A 5'UTR//CDS       24981863//27773536//22608085
chr1:201915507-201915508(-) m6A 5'UTR       24981863//27773536//22608085
chr1:201915632-201915633(-) m6A 5'UTR       24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LMOD1
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US29-5p
Interactor2: LMOD1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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