Basic Information:

  VIRBase ID:  

VHID00266146

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US29-5p:  MIMAT0028167          CLCF1:  NM_013246     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US29-5p	CLCF1
miRBase Accession/Entrez ID	MIMAT0028167	23529
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BSF-3//BSF3//CISS2//CLC//NNT-1//NNT1//NR6

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CLCF1	chr11:67131945-67131946(-) m6A 3'UTR       24981863 chr11:67131964-67131965(-) m6A 3'UTR       24981863 chr11:67131969-67131970(-) m6A 3'UTR       25456834//24981863//27773535 chr11:67132000-67132001(-) m6A 3'UTR       24284625//25456834//24981863//27773535 chr11:67132005-67132006(-) m6A 3'UTR       24284625//25456834//24981863//27773535 chr11:67132014-67132015(-) m6A 3'UTR       24284625//25456834//24981863//27773535 chr11:67132050-67132051(-) m6A 3'UTR       24284625//24981863//27773535 chr11:67132131-67132132(-) m6A 3'UTR       27773535 chr11:67132482-67132483(-) m6A 3'UTR       27773535 chr11:67132514-67132515(-) m6A 3'UTR       24284625//24981863//27773535 chr11:67132572-67132573(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828 chr11:67132682-67132683(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr11:67132707-67132708(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr11:67132776-67132777(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr11:67132786-67132787(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr11:67132791-67132792(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr11:67132967-67132968(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr11:67132984-67132985(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr11:67133037-67133038(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr11:67133066-67133067(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960 chr11:67133096-67133097(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960 chr11:67134935-67134936(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960 chr11:67134986-67134987(-) m6A CDS       24284625//24209618//24981863//27773535 chr11:67135015-67135016(-) m6A CDS       24284625//24209618//27773535 chr11:67135093-67135094(-) m6A 5'UTR//CDS       24209618 chr11:67141005-67141006(-) m6A CDS//intron       24209618//27773536 chr11:67141127-67141128(-) m6A 5'UTR//intron       24981863//27773535 chr11:67141141-67141142(-) m6A 5'UTR//intron       24981863//27773535 chr11:67141533-67141534(-) m6A 5'UTR       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CLCF1	Chromatin K562 cells     - Exosome Blood     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US29-5p
Interactor2: CLCF1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg