Basic Information:

  VIRBase ID:  

VHID00265698

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US29-5p:  MIMAT0028167          PDLIM4:  NM_001131027     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US29-5p	PDLIM4
miRBase Accession/Entrez ID	MIMAT0028167	8572
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	RIL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PDLIM4	chr5:131605249(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PDLIM4	chr5:131608186-131608187(+) m6A 3'UTR       24209618 chr5:131608301-131608302(+) m6A 3'UTR       24209618 chr5:131608324-131608325(+) m6A 3'UTR       24209618 chr5:131608339-131608340(+) m6A 3'UTR       24209618 chr5:131608874-131608875(+) m6A 3'UTR       24209618 chr5:131608924-131608925(+) m6A 3'UTR       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PDLIM4	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US29-5p
Interactor2: PDLIM4

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg