Basic Information:

  VIRBase ID:  

VHID00264860

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-3p:  MIMAT0028166          SPATC1:  NM_198572     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US22-3p	SPATC1
miRBase Accession/Entrez ID	MIMAT0028166	375686
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SPATA15

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SPATC1	chr8:145099332(+) A-I      intronic chr8:145099342(+) A-I      intronic chr8:145099344(+) A-I      intronic chr8:145091046(+) A-I      intronic chr8:145091069(+) A-I      intronic chr8:145099320(+) A-I      intronic chr8:145099329(+) A-I      intronic chr8:145087953(+) A-I      intronic chr8:145089973(+) A-I      intronic chr8:145089440(+) A-I      intronic chr8:145090985(+) A-I      intronic chr8:145089974(+) A-I      intronic chr8:145087866(+) A-I      intronic chr8:145090109(+) A-I      intronic chr8:145090890(+) A-I      intronic chr8:145089420(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SPATC1	chr8:145087866(+) A-G intron -    22484847 chr8:145089347(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SPATC1	chr8:145095825-145095826(+) m6A CDS       25456834 chr8:145095928-145095929(+) m6A CDS       25456834 chr8:145095980-145095981(+) m6A CDS       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SPATC1	Chromatin K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane K562 cells     - Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US22-3p
Interactor2: SPATC1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg