Detail Information

Basic Information:


  VIRBase ID:  

VHID00264763

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-3p:           TMEM184A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US22-3p TMEM184A
miRBase
Accession/Entrez ID		 MIMAT0028166 202915
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - SDMG1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMEM184A
chr7:1592527(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMEM184A
chr7:1591887(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMEM184A
chr7:1581895-1581896(-) m6A 3'UTR       24284625//24981863
chr7:1581934-1581935(-) m6A 3'UTR       24284625//25456834//24981863
chr7:1582093-1582094(-) m6A 3'UTR       24284625//25456834//24981863//26404942
chr7:1582098-1582099(-) m6A 3'UTR       24284625//25456834//24981863//26404942
chr7:1582111-1582112(-) m6A 3'UTR       24284625//24981863//22575960
chr7:1582120-1582121(-) m6A 3'UTR       24284625//24981863//22575960
chr7:1582193-1582194(-) m6A 3'UTR       24284625//24981863
chr7:1582253-1582254(-) m6A 3'UTR       24284625//24981863//27773535
chr7:1582356-1582357(-) m6A 3'UTR       24284625//24981863//26404942//27773535
chr7:1582363-1582364(-) m6A 3'UTR       24284625//24981863//26404942//27773535
chr7:1582397-1582398(-) m6A 3'UTR       24284625//24981863//26404942//27773535
chr7:1582486-1582487(-) m6A 3'UTR       24284625//27773535
chr7:1582565-1582566(-) m6A 3'UTR       24284625//27773535
chr7:1582672-1582673(-) m6A 3'UTR       24284625//27773535
chr7:1582767-1582768(-) m6A 3'UTR       24284625
chr7:1582892-1582893(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960
chr7:1582913-1582914(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960
chr7:1582922-1582923(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960
chr7:1582951-1582952(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960
chr7:1583007-1583008(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22575960
chr7:1583091-1583092(-) m6A 3'UTR       24284625//24981863
chr7:1583237-1583238(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960
chr7:1583276-1583277(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960
chr7:1583335-1583336(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960
chr7:1583461-1583462(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr7:1583484-1583485(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr7:1583607-1583608(-) m6A 3'UTR//exon       24284625//24981863//27773535
chr7:1584172-1584173(-) m6A 3'UTR//intron       24284625//25456834//24981863
chr7:1584402-1584403(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22575960
chr7:1584408-1584409(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22575960
chr7:1584462-1584463(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22575960
chr7:1584493-1584494(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//27371828//22575960
chr7:1584506-1584507(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960
chr7:1584517-1584518(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960
chr7:1584555-1584556(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960
chr7:1584640-1584641(-) m6A 3'UTR//exon//intron       24284625
chr7:1584646-1584647(-) m6A 3'UTR//exon//intron       24284625
chr7:1584799-1584800(-) m6A 3'UTR//exon//intron       24284625
chr7:1584847-1584848(-) m6A 3'UTR//exon//intron       24284625
chr7:1584971-1584972(-) m6A 3'UTR//exon//intron       24284625//24981863
chr7:1585030-1585031(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863
chr7:1585050-1585051(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863
chr7:1585068-1585069(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863
chr7:1585076-1585077(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863
chr7:1585127-1585128(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863
chr7:1585157-1585158(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863
chr7:1585296-1585297(-) m6A 3'UTR//exon       24284625//25456834//24981863
chr7:1585364-1585365(-) m6A 3'UTR//exon       24284625//25456834//24981863//22575960
chr7:1585385-1585386(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960
chr7:1585402-1585403(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960
chr7:1585571-1585572(-) m6A 3'UTR//exon       24284625
chr7:1585614-1585615(-) m6A 3'UTR//exon       24284625
chr7:1585878-1585879(-) m6A 3'UTR//exon       24284625
chr7:1585945-1585946(-) m6A 3'UTR//exon       24284625
chr7:1586209-1586210(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960
chr7:1586226-1586227(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960
chr7:1586253-1586254(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960
chr7:1586337-1586338(-) m6A 3'UTR//exon       24284625//24981863//22575960
chr7:1586529-1586530(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960
chr7:1586558-1586559(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22575960
chr7:1586594-1586595(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27371828//22575960
chr7:1586756-1586757(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr7:1586772-1586773(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr7:1587392-1587393(-) m1A 3'UTR//CDS//exon       26863196
chr7:1587472-1587473(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr7:1587511-1587512(-) m6A 3'UTR//CDS//exon       24284625//27773535
chr7:1587524-1587525(-) m6A 3'UTR//CDS//exon       24284625
chr7:1588355-1588356(-) m6A exon//intron       24284625//24981863//27773535
chr7:1588374-1588375(-) m6A exon//intron       24284625//27773535
chr7:1588414-1588415(-) m6A exon//intron       27773535
chr7:1594927-1594928(-) m6A CDS//exon       24284625
chr7:1595001-1595002(-) m6A CDS//exon       24284625
chr7:1595013-1595014(-) m6A CDS//exon       24284625
chr7:1595064-1595065(-) m6A CDS//exon       24284625//24981863
chr7:1595092-1595093(-) m6A CDS//exon       24284625//24981863
chr7:1595615-1595616(-) m6A 5'UTR//intron       24284625//24981863
chr7:1595638-1595639(-) m6A 5'UTR//intron       24284625
chr7:1595777-1595778(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TMEM184A
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US22-3p
Interactor2: TMEM184A

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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