Basic Information:

  VIRBase ID:  

VHID00264305

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-3p:  MIMAT0028166          FAM20C:  NM_020223     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US22-3p	FAM20C
miRBase Accession/Entrez ID	MIMAT0028166	56975
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DMP-4//DMP4//G-CK//GEF-CK//RNS

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAM20C	chr7:196235(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAM20C	chr7:193018-193019(+) m6A 5'UTR       25456834//24981863 chr7:193066-193067(+) m6A 5'UTR       24209618//25456834//24981863//22575960 chr7:193102-193103(+) m6A 5'UTR       24209618//25456834//24981863//22575960 chr7:193281-193282(+) m6A CDS       24981863//22575960 chr7:193476-193477(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr7:193525-193526(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr7:193588-193589(+) m6A CDS       24209618//25456834//22575960 chr7:193623-193624(+) m6A CDS       22575960 chr7:193758-193759(+) m6A CDS       24284625//25456834//24981863 chr7:193794-193795(+) m6A CDS       24284625//25456834//24981863 chr7:193800-193801(+) m6A CDS       24284625//25456834//24981863 chr7:195609-195610(+) m6A CDS//exon       24284625//25456834//24981863 chr7:195670-195671(+) m6A CDS//exon       24284625//25456834//24981863 chr7:197159-197160(+) m6A exon//intron       24284625//25456834 chr7:197226-197227(+) m6A exon//intron       24284625//25456834//24981863 chr7:197247-197248(+) m6A exon//intron       24284625//25456834//24981863 chr7:197353-197354(+) m6A exon//intron       24284625//25456834 chr7:197553-197554(+) m6A exon//intron       24284625 chr7:208967-208968(+) m6A CDS//exon       - chr7:285902-285903(+) m6A exon//intron       - chr7:295886-295887(+) m6A CDS//exon       24284625 chr7:295945-295946(+) m6A CDS//exon       24284625 chr7:295955-295956(+) m6A CDS//exon       24284625 chr7:296630-296631(+) m6A CDS//exon       24284625 chr7:296659-296660(+) m6A CDS//exon       24284625 chr7:296702-296703(+) m6A CDS//exon       24284625 chr7:296973-296974(+) m6A CDS//exon       24284625 chr7:296979-296980(+) m6A CDS//exon       24284625 chr7:296996-296997(+) m6A CDS//exon       24284625 chr7:299785-299786(+) m6A CDS//exon       24284625//24209618//25456834 chr7:299830-299831(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr7:299866-299867(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr7:299914-299915(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr7:299979-299980(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr7:299992-299993(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr7:300107-300108(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr7:300168-300169(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr7:300265-300266(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr7:300301-300302(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr7:300306-300307(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr7:300314-300315(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr7:300381-300382(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr7:300398-300399(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr7:300524-300525(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr7:300580-300581(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FAM20C	Exosome Blood     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US22-3p
Interactor2: FAM20C

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg