Basic Information:

  VIRBase ID:  

VHID00264269

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-3p:  MIMAT0028166          RABL6:  NM_024718     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US22-3p	RABL6
miRBase Accession/Entrez ID	MIMAT0028166	55684
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C9orf86//PARF//pp8875//RBEL1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RABL6	chr9:139718857(+) A-I      intronic chr9:139718862(+) A-I      intronic chr9:139718883(+) A-I      intronic chr9:139718921(+) A-I      intronic chr9:139728965(+) A-I      intronic chr9:139729035(+) A-I      intronic chr9:139729056(+) A-I      intronic chr9:139729057(+) A-I      intronic chr9:139729070(+) A-I      intronic chr9:139729152(+) A-I      intronic chr9:139729268(+) A-I      intronic chr9:139729284(+) A-I      intronic chr9:139729285(+) A-I      intronic chr9:139729317(+) A-I      intronic chr9:139729319(+) A-I      intronic chr9:139729190(+) A-I      intronic chr9:139712394(+) A-I      intronic chr9:139712393(+) A-I      intronic chr9:139712375(+) A-I      intronic chr9:139712358(+) A-I      intronic chr9:139712356(+) A-I      intronic chr9:139712349(+) A-I      intronic chr9:139709109(+) A-I      intronic chr9:139706891(+) A-I      intronic chr9:139706864(+) A-I      intronic chr9:139705883(+) A-I      intronic chr9:139705837(+) A-I      intronic chr9:139705869(+) A-I      intronic chr9:139705917(+) A-I      intronic chr9:139705919(+) A-I      intronic chr9:139706738(+) A-I      intronic chr9:139706810(+) A-I      intronic chr9:139706968(+) A-I      intronic chr9:139707016(+) A-I      intronic chr9:139708773(+) A-I      intronic chr9:139708783(+) A-I      intronic chr9:139708789(+) A-I      intronic chr9:139708799(+) A-I      intronic chr9:139708800(+) A-I      intronic chr9:139708817(+) A-I      intronic chr9:139709015(+) A-I      intronic chr9:139709083(+) A-I      intronic chr9:139709092(+) A-I      intronic chr9:139709118(+) A-I      intronic chr9:139709174(+) A-I      intronic chr9:139713010(+) A-I      intronic chr9:139713659(+) A-I      intronic chr9:139713663(+) A-I      intronic chr9:139713676(+) A-I      intronic chr9:139714679(+) A-I      intronic chr9:139714718(+) A-I      intronic chr9:139715023(+) A-I      intronic chr9:139715085(+) A-I      intronic chr9:139715097(+) A-I      intronic chr9:139718828(+) A-I      intronic chr9:139710731(+) A-I      intronic chr9:139712383(+) A-I      intronic chr9:139705255(+) A-I      intronic chr9:139729530(+) A-I      intronic chr9:139715006(+) A-I      intronic chr9:139715003(+) A-I      intronic chr9:139705178(+) A-I      intronic chr9:139714413(+) A-I      intronic chr9:139712456(+) A-I      intronic chr9:139714471(+) A-I      intronic chr9:139729482(+) A-I      intronic chr9:139711075(+) A-I      intronic chr9:139729168(+) A-I      intronic chr9:139705918(+) A-I      intronic chr9:139708738(+) A-I      intronic chr9:139708666(+) A-I      intronic chr9:139706154(+) A-I      intronic chr9:139710754(+) A-I      intronic chr9:139712941(+) A-I      intronic chr9:139710947(+) A-I      intronic chr9:139708664(+) A-I      intronic chr9:139705886(+) A-I      intronic chr9:139714758(+) A-I      intronic chr9:139709037(+) A-I      intronic chr9:139710952(+) A-I      intronic chr9:139705909(+) A-I      intronic chr9:139729453(+) A-I      intronic chr9:139711119(+) A-I      intronic chr9:139711048(+) A-I      intronic chr9:139709016(+) A-I      intronic chr9:139706757(+) A-I      intronic chr9:139706811(+) A-I      intronic chr9:139729133(+) A-I      intronic chr9:139711008(+) A-I      intronic chr9:139706961(+) A-I      intronic chr9:139729483(+) A-I      intronic chr9:139729220(+) A-I      intronic chr9:139714953(+) A-I      intronic chr9:139704012(+) A-I      intronic chr9:139713076(+) A-I      intronic chr9:139711049(+) A-I      intronic chr9:139706846(+) A-I      intronic chr9:139706756(+) A-I      intronic chr9:139709026(+) A-I      intronic chr9:139729297(+) A-I      intronic chr9:139729532(+) A-I      intronic chr9:139729204(+) A-I      intronic chr9:139709052(+) A-I      intronic chr9:139706179(+) A-I      intronic chr9:139705267(+) A-I      intronic chr9:139709040(+) A-I      intronic chr9:139712285(+) A-I      intronic chr9:139715032(+) A-I      intronic chr9:139705814(+) A-I      intronic chr9:139714540(+) A-I      intronic chr9:139711006(+) A-I      intronic chr9:139706142(+) A-I      intronic chr9:139710621(+) A-I      intronic chr9:139709106(+) A-I      intronic chr9:139710636(+) A-I      intronic chr9:139705815(+) A-I      intronic chr9:139708197(+) A-I      intronic chr9:139710819(+) A-I      intronic chr9:139709153(+) A-I      intronic chr9:139705063(+) A-I      intronic chr9:139705950(+) A-I      intronic chr9:139710669(+) A-I      intronic chr9:139708763(+) A-I      intronic chr9:139708823(+) A-I      intronic chr9:139708162(+) A-I      intronic chr9:139714668(+) A-I      intronic chr9:139712940(+) A-I      intronic chr9:139729538(+) A-I      intronic chr9:139709123(+) A-I      intronic chr9:139729534(+) A-I      intronic chr9:139713086(+) A-I      intronic chr9:139705996(+) A-I      intronic chr9:139705200(+) A-I      intronic chr9:139714603(+) A-I      intronic chr9:139713012(+) A-I      intronic chr9:139708137(+) A-I      intronic chr9:139729206(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RABL6	chr9:139702514-139702515(+) m6A 5'UTR       24209618//24981863 chr9:139702569-139702570(+) m6A 5'UTR       24209618 chr9:139702666-139702667(+) m1A CDS       26863410 chr9:139702682-139702683(+) m6A CDS       24284625//24209618 chr9:139702700-139702701(+) m6A CDS       24284625//24209618 chr9:139702706-139702707(+) m6A CDS       24284625//24209618 chr9:139702733-139702734(+) m6A CDS       24284625//24209618 chr9:139702827-139702828(+) m6A intron       24284625//24209618 chr9:139703678-139703679(+) m6A intron       22608085 chr9:139703694-139703695(+) m6A intron       22608085 chr9:139703788-139703789(+) m6A intron       22608085 chr9:139704140-139704141(+) m6A intron       22608085 chr9:139704227-139704228(+) m6A intron       24284625//24981863//22608085 chr9:139704249-139704250(+) m6A intron       24284625//24981863//22608085 chr9:139704296-139704297(+) m6A intron       24284625//25456834//24981863//22608085 chr9:139704338-139704339(+) m6A intron       24284625//25456834//24981863//22608085 chr9:139704362-139704363(+) m6A intron       24284625//25456834//24981863//22608085 chr9:139715793-139715794(+) m6A 5'UTR//intron       24284625//24209618//24981863 chr9:139715806-139715807(+) m6A 5'UTR//intron       24284625//24209618//24981863 chr9:139715822-139715823(+) m6A 5'UTR//intron       24284625//24209618//24981863 chr9:139716471-139716472(+) m6A 5'UTR//intron       24209618//24981863 chr9:139716504-139716505(+) m6A CDS//intron       24284625//24209618//24981863 chr9:139717997-139717998(+) m6A CDS       24284625//24209618//24981863//22575960 chr9:139718003-139718004(+) m6A CDS       24284625//24209618//24981863//22575960 chr9:139718014-139718015(+) m6A CDS       24284625//24209618//24981863//22575960 chr9:139719125-139719126(+) m6A intron       24209618//24981863//27773535 chr9:139719192-139719193(+) m6A intron       24981863 chr9:139719206-139719207(+) m6A intron       24981863 chr9:139719688-139719689(+) m6A intron       - chr9:139719715-139719716(+) m6A intron       - chr9:139719788-139719789(+) m6A intron       24209618//24981863 chr9:139719794-139719795(+) m6A intron       24209618//24981863 chr9:139720272-139720273(+) m6A CDS       24209618//24981863//22575960 chr9:139721097-139721098(+) m6A 5'UTR//exon//intron       24209618//24981863 chr9:139721595-139721596(+) m6A 5'UTR//exon//intron       - chr9:139722877-139722878(+) m6A 5'UTR//exon//intron       24209618//24981863 chr9:139723893-139723894(+) m6A 5'UTR//CDS//exon       24284625//24981863//22575960 chr9:139725411-139725412(+) m6A intron       25456834 chr9:139726240-139726241(+) m6A 5'UTR//CDS//exon       24284625//22575960 chr9:139726249-139726250(+) m6A 5'UTR//CDS//exon       24284625//22575960 chr9:139726309-139726310(+) m6A 5'UTR//CDS//exon       24284625 chr9:139727170-139727171(+) m6A 3'UTR//intron       24284625 chr9:139727284-139727285(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr9:139727292-139727293(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr9:139727310-139727311(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr9:139727315-139727316(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr9:139727335-139727336(+) m6A 3'UTR//intron       24284625//24981863//22608085 chr9:139727995-139727996(+) m6A 3'UTR//intron       24284625 chr9:139728038-139728039(+) m6A 3'UTR//intron       24284625 chr9:139728044-139728045(+) m6A 3'UTR//intron       24284625 chr9:139728126-139728127(+) m6A 3'UTR//intron       24284625//25456834//22608085 chr9:139728250-139728251(+) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//22575960//22608085 chr9:139728294-139728295(+) m6A 3'UTR//CDS//intron       24284625//25456834//24981863//22575960//22608085 chr9:139728426-139728427(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr9:139728458-139728459(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr9:139728465-139728466(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr9:139728569-139728570(+) m6A 3'UTR//intron       24284625//25456834//24981863//22608085 chr9:139728652-139728653(+) m6A 3'UTR//intron       24284625 chr9:139729700-139729701(+) m6A exon//intron       24284625 chr9:139729716-139729717(+) m6A exon//intron       24284625 chr9:139730224-139730225(+) m6A CDS//exon       24284625//22575960 chr9:139730233-139730234(+) m6A CDS//exon       24284625//22575960 chr9:139730281-139730282(+) m6A CDS//exon       24284625//22575960 chr9:139730287-139730288(+) m6A CDS//exon       24284625//22575960 chr9:139730309-139730310(+) m6A CDS//exon//intron       24284625//22575960 chr9:139730380-139730381(+) m6A CDS//exon//intron       24284625//22575960 chr9:139730444-139730445(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960 chr9:139730496-139730497(+) m6A 3'UTR//exon//intron       24284625//25456834//27371828//22575960 chr9:139730696-139730697(+) m6A 3'UTR//exon//intron       24284625//22575960 chr9:139730793-139730794(+) m6A 3'UTR//exon//intron       24284625//22575960 chr9:139730855-139730856(+) m6A 3'UTR//exon//intron       24284625//22575960//22608085 chr9:139730867-139730868(+) m6A 3'UTR//exon//intron       24284625//22575960//22608085 chr9:139730963-139730964(+) m6A 3'UTR//exon//intron       24284625//25456834//22575960//22608085 chr9:139730975-139730976(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085 chr9:139731010-139731011(+) m6A 3'UTR//exon//intron       24284625//25456834//24981863//22575960//22608085 chr9:139731077-139731078(+) m6A 3'UTR//exon//intron       24284625//25456834//27371828//22575960//22608085 chr9:139731176-139731177(+) m6A 3'UTR//exon//intron       24284625//25456834//22575960 chr9:139731252-139731253(+) m6A 3'UTR//exon//intron       24284625//25456834//22575960//22608085 chr9:139731283-139731284(+) m6A 3'UTR//exon//intron       24284625//25456834//22575960//22608085 chr9:139731686-139731687(+) m6A exon//intron       24284625 chr9:139732361-139732362(+) m6A CDS//exon//intron       24284625//27371828//22575960 chr9:139732385-139732386(+) m6A CDS//exon//intron       24284625//27371828//22575960 chr9:139732403-139732404(+) m6A CDS//exon//intron       24284625//27371828//22575960 chr9:139732457-139732458(+) m6A CDS//exon//intron       24284625//22575960 chr9:139733416-139733417(+) m6A CDS//exon//intron       24284625//22575960 chr9:139733425-139733426(+) m6A CDS//exon//intron       24284625//22575960 chr9:139733476-139733477(+) m6A CDS//exon//intron       24284625//22575960 chr9:139733565-139733566(+) m6A CDS//exon//intron       24284625//22575960 chr9:139733707-139733708(+) m6A CDS//exon//intron       24284625//22575960 chr9:139733722-139733723(+) m6A CDS//exon//intron       24284625//27371828//22575960 chr9:139733856-139733857(+) m6A 3'UTR//CDS//exon//intron       24284625//22575960 chr9:139733921-139733922(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//27371828 chr9:139734246-139734247(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//24981863//27773535//27371828//22575960 chr9:139734263-139734264(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr9:139734294-139734295(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr9:139734306-139734307(+) Cm 3'UTR//CDS//exon//intron       - chr9:139734619-139734620(+) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr9:139734637-139734638(+) m1A 3'UTR//CDS//intron       26863196 chr9:139734646-139734647(+) m1A 3'UTR//CDS//intron       26863196 chr9:139734777-139734778(+) m1A 3'UTR//CDS//intron       26863196 chr9:139734797-139734798(+) m1A 3'UTR//CDS//intron       26863196 chr9:139734805-139734806(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr9:139734822-139734823(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr9:139735188-139735189(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139735215-139735216(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139735281-139735282(+) m6A 3'UTR//CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139735420-139735421(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr9:139735434-139735435(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr9:139735481-139735482(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085 chr9:139735599-139735600(+) m6A 3'UTR//intron       24284625 chr9:139735612-139735613(+) m6A 3'UTR//intron       24284625 chr9:139738915-139738916(+) m6A intron       24284625 chr9:139738937-139738938(+) m6A intron       24284625 chr9:139739061-139739062(+) m6A intron       24284625 chr9:139739653-139739654(+) m6A intron       24284625//24981863 chr9:139739879-139739880(+) m6A intron       24284625 chr9:139739998-139739999(+) m6A intron       24284625//24981863 chr9:139740073-139740074(+) m6A intron       24284625//24981863 chr9:139740214-139740215(+) m6A intron       24284625 chr9:139740247-139740248(+) m6A intron       24284625 chr9:139740277-139740278(+) m6A intron       24284625 chr9:139740349-139740350(+) m6A intron       24284625 chr9:139740622-139740623(+) m6A intron       24209618//24981863//22575960 chr9:139740709-139740710(+) m6A intron       24981863 chr9:139740827-139740828(+) m6A intron       24284625//24209618//24981863//22575960 chr9:139740888-139740889(+) m6A intron       24284625//24209618//24981863//22575960 chr9:139740970-139740971(+) m6A intron       24284625//24209618//24981863//22575960 chr9:139741132-139741133(+) Tm intron       - chr9:139741286-139741287(+) m6A intron       24284625//24981863//22575960 chr9:139741328-139741329(+) m6A intron       24981863//22575960 chr9:139741350-139741351(+) m6A intron       24981863//22575960 chr9:139741693-139741694(+) m6A intron       24284625//24981863//22575960 chr9:139742113-139742114(+) m1A intron       26863196 chr9:139742166-139742167(+) m6A intron       - chr9:139742210-139742211(+) m6A intron       - chr9:139742329-139742330(+) m6A intron       - chr9:139742377-139742378(+) m6A intron       - chr9:139742557-139742558(+) m6A intron       - chr9:139742612-139742613(+) m6A intron       - chr9:139742618-139742619(+) m6A intron       - chr9:139742677-139742678(+) m6A intron       - chr9:139743193-139743194(+) m6A intron       - chr9:139743227-139743228(+) m6A intron       24981863 chr9:139743501-139743502(+) m6A intron       24284625//24209618//25456834//24981863//27371828//27773536 chr9:139743513-139743514(+) m6A intron       24284625//24209618//25456834//24981863//27371828//27773536 chr9:139743605-139743606(+) m6A intron       24284625//25456834//24981863//22608085 chr9:139743621-139743622(+) m6A intron       24284625//25456834//24981863//22608085 chr9:139743710-139743711(+) m6A intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139743865-139743866(+) m6A intron       24284625//24209618//25456834//24981863//22575960 chr9:139743880-139743881(+) m6A intron       24284625//24209618//25456834//24981863//22575960 chr9:139743895-139743896(+) m6A intron       24284625//24209618//24981863//22575960 chr9:139743919-139743920(+) m6A intron       24284625//24981863//22575960 chr9:139744387-139744388(+) m6A intron       22575960 chr9:139744467-139744468(+) m6A intron       22575960 chr9:139744557-139744558(+) m6A intron       22575960 chr9:139744946-139744947(+) m6A intron       24284625 chr9:139744962-139744963(+) m6A intron       24284625 chr9:139745435-139745436(+) m6A intron       - chr9:139746310-139746311(+) m6A intron       24284625 chr9:139746329-139746330(+) m6A intron       24284625 chr9:139746821-139746822(+) m6A intron       24284625 chr9:139748513-139748514(+) m6A intron       27773536 chr9:139748687-139748688(+) m6A intron       27773536 chr9:139748704-139748705(+) m6A intron       27773536 chr9:139748746-139748747(+) m6A intron       27773536 chr9:139748758-139748759(+) m6A intron       27773536 chr9:139748773-139748774(+) m6A intron       27773536 chr9:139749016-139749017(+) m6A intron       27773536 chr9:139749035-139749036(+) m6A intron       27773536 chr9:139749059-139749060(+) m6A intron       27773536 chr9:139749116-139749117(+) m6A intron       27773536 chr9:139749448-139749449(+) m6A intron       27773536 chr9:139749511-139749512(+) m6A intron       27773536 chr9:139749527-139749528(+) m6A intron       27773536 chr9:139751924-139751925(+) m6A intron       - chr9:139751930-139751931(+) m6A intron       - chr9:139752014-139752015(+) m6A intron       24284625 chr9:139752028-139752029(+) m6A intron       24284625 chr9:139752128-139752129(+) m6A intron       24284625 chr9:139752603-139752604(+) m6A intron       27773536 chr9:139753884-139753885(+) m6A intron       24284625 chr9:139753889-139753890(+) m6A intron       24284625 chr9:139780635-139780636(+) m6A intron       27773536 chr9:139780650-139780651(+) m6A intron       27773536 chr9:139781917-139781918(+) Cm intron       - chr9:139793255-139793256(+) m6A intron       24284625 chr9:139793267-139793268(+) m6A intron       24284625 chr9:139794059-139794060(+) m6A intron       24284625 chr9:139794954-139794955(+) m6A intron       24284625 chr9:139796825-139796826(+) m6A intron       24284625 chr9:139796844-139796845(+) m6A intron       24284625 chr9:139802233-139802234(+) Cm intron       - chr9:139802672-139802673(+) Cm intron       - chr9:139814699-139814700(+) m6A intron       24284625//24209618 chr9:139814785-139814786(+) m6A intron       24284625//24209618//24981863 chr9:139814857-139814858(+) m6A intron       24284625//24209618 chr9:139814875-139814876(+) m6A intron       24284625//24209618 chr9:139814935-139814936(+) m6A intron       24284625 chr9:139814941-139814942(+) m6A intron       24284625 chr9:139815523-139815524(+) m6A intron       - chr9:139818377-139818378(+) m6A intron       24284625 chr9:139820237-139820238(+) m6A intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139820336-139820337(+) m6A intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr9:139820546-139820547(+) m6A intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139820676-139820677(+) m6A intron       24284625//24209618//25456834//24981863//22575960//22608085 chr9:139820867-139820868(+) m6A intron       24284625 chr9:139831062-139831063(+) m6A intron       27773535 chr9:139831074-139831075(+) m6A intron       27773535 chr9:139831106-139831107(+) m6A intron       27773535 chr9:139839787-139839788(+) m6A intron       - chr9:139840991-139840992(+) m6A intron       27371828 chr9:139841120-139841121(+) m6A intron       27371828 chr9:139844077-139844078(+) m6A intron       27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RABL6	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US22-3p
Interactor2: RABL6

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg