Detail Information

Basic Information:


  VIRBase ID:  

VHID00264144

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-3p:           NOB1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US22-3p NOB1
miRBase
Accession/Entrez ID		 MIMAT0028166 28987
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - ART-4//MST158//MSTP158//NOB1P//PSMD8BP1

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NOB1
chr16:69786833(-) A-I      intronic
chr16:69784096(-) A-I      intronic
chr16:69784109(-) A-I      intronic
chr16:69782024(-) A-I      intronic
chr16:69783637(-) A-I      intronic
chr16:69783651(-) A-I      intronic
chr16:69783711(-) A-I      intronic
chr16:69783769(-) A-I      intronic
chr16:69783915(-) A-I      intronic
chr16:69784090(-) A-I      intronic
chr16:69786968(-) A-I      intronic
chr16:69785157(-) A-I      intronic
chr16:69784063(-) A-I      intronic
chr16:69785061(-) A-I      intronic
chr16:69784495(-) A-I      intronic
chr16:69781985(-) A-I      intronic
chr16:69784101(-) A-I      intronic
chr16:69785186(-) A-I      intronic
chr16:69784021(-) A-I      intronic
chr16:69783969(-) A-I      intronic
chr16:69785081(-) A-I      intronic
chr16:69786625(-) A-I      intronic
chr16:69787805(-) A-I      intronic
chr16:69781946(-) A-I      intronic
chr16:69785142(-) A-I      intronic
chr16:69784087(-) A-I      intronic
chr16:69780564(-) A-I      intronic
chr16:69786670(-) A-I      intronic
chr16:69784150(-) A-I      intronic
chr16:69784045(-) A-I      intronic
chr16:69786668(-) A-I      intronic
chr16:69783709(-) A-I      intronic
chr16:69783715(-) A-I      intronic
chr16:69784044(-) A-I      intronic
chr16:69783974(-) A-I      intronic
chr16:69783970(-) A-I      intronic
chr16:69786824(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NOB1
chr16:69784160(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NOB1
chr16:69775779-69775780(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr16:69775786-69775787(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr16:69775992-69775993(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:69776001-69776002(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:69776067-69776068(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:69776072-69776073(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:69776146-69776147(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr16:69776307-69776308(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr16:69776398-69776399(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr16:69778791-69778792(-) m6A 3'UTR//CDS       24284625//27773535//27773536
chr16:69778870-69778871(-) m6A 3'UTR//CDS       24284625//27773535//27773536
chr16:69778875-69778876(-) m6A 3'UTR//CDS       24284625//27773535//27773536
chr16:69782658-69782659(-) m6A exon//intron       24284625
chr16:69782703-69782704(-) m6A exon//intron       24284625
chr16:69782741-69782742(-) m6A exon//intron       24284625
chr16:69782833-69782834(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535
chr16:69782959-69782960(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//27371828
chr16:69783130-69783131(-) m6A 3'UTR//CDS//exon       24981863//27773535//27371828
chr16:69783155-69783156(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr16:69783188-69783189(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr16:69783211-69783212(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr16:69783222-69783223(-) m6A 3'UTR//CDS//exon       27773535
chr16:69783235-69783236(-) m6A 3'UTR//CDS//exon       27773535
chr16:69783499-69783500(-) m6A 3'UTR//CDS//exon//intron       27773535
chr16:69786152-69786153(-) m6A CDS//exon//intron       27773535
chr16:69786158-69786159(-) m6A CDS//exon//intron       27773535
chr16:69786222-69786223(-) m6A CDS//exon//intron       27773535
chr16:69786246-69786247(-) m6A CDS//exon//intron       27773535
chr16:69786253-69786254(-) m6A CDS//exon//intron       27773535
chr16:69788576-69788577(-) m6A CDS//exon       24284625//27773535
chr16:69788615-69788616(-) m6A CDS//exon       24284625//24981863//27773535
chr16:69788627-69788628(-) m6A CDS//exon       24284625//24981863//27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NOB1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US22-3p
Interactor2: NOB1

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid
Support Database VmiReg

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