Basic Information:

  VIRBase ID:  

VHID00264136

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-3p:  MIMAT0028166          ARHGEF16:  NM_014448     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US22-3p	ARHGEF16
miRBase Accession/Entrez ID	MIMAT0028166	27237
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	GEF16//NBR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARHGEF16	chr1:3371234-3371235(+) m6A 5'UTR       25456834 chr1:3371269-3371270(+) m6A 5'UTR       25456834 chr1:3371302-3371303(+) m6A 5'UTR       25456834 chr1:3371307-3371308(+) m6A 5'UTR       25456834 chr1:3371312-3371313(+) m6A 5'UTR       25456834 chr1:3379667-3379668(+) m6A CDS       24284625//25456834//22575960 chr1:3379695-3379696(+) m6A CDS       24284625//25456834//24981863//22575960 chr1:3379736-3379737(+) m6A CDS       24284625//25456834//24981863//22575960 chr1:3379948-3379949(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:3380009-3380010(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:3380060-3380061(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:3380066-3380067(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:3380090-3380091(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:3380099-3380100(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:3380196-3380197(+) m6A CDS       24284625//25456834//22575960 chr1:3380231-3380232(+) m6A CDS       24284625//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARHGEF16	Exosome Blood     - Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US22-3p
Interactor2: ARHGEF16

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg