Basic Information:

  VIRBase ID:  

VHID00263529

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-3p:  MIMAT0028166          GPC1:  NM_002081     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US22-3p	GPC1
miRBase Accession/Entrez ID	MIMAT0028166	2817
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	glypican

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GPC1	chr2:241394836(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GPC1	chr2:241375090-241375091(+) m6A 5'UTR       24209618 chr2:241375136-241375137(+) m6A 5'UTR       24209618 chr2:241375216-241375217(+) m6A 5'UTR       24209618 chr2:241375238-241375239(+) m6A 5'UTR       24209618 chr2:241375266-241375267(+) m6A 5'UTR       24209618 chr2:241375276-241375277(+) m6A 5'UTR       24209618 chr2:241375405-241375406(+) m6A CDS       24209618 chr2:241381765-241381766(+) m6A exon//intron       24209618 chr2:241398506-241398507(+) m6A CDS//exon       24284625 chr2:241398538-241398539(+) m6A CDS//exon       24284625 chr2:241398551-241398552(+) m6A CDS//exon       24284625 chr2:241401709-241401710(+) m6A CDS//exon       - chr2:241401850-241401851(+) m6A CDS//exon       24284625//25456834//24981863 chr2:241402920-241402921(+) m6A CDS//exon       24284625 chr2:241404291-241404292(+) m6A CDS//exon       - chr2:241404530-241404531(+) m6A CDS//exon       24284625 chr2:241404553-241404554(+) m6A CDS//exon       24284625 chr2:241404954-241404955(+) m6A CDS//exon       24284625//26404942//22575960 chr2:241404969-241404970(+) m6A CDS//exon       24284625//26404942//22575960 chr2:241405050-241405051(+) m6A CDS//exon       24284625//26404942 chr2:241405607-241405608(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr2:241405614-241405615(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr2:241405726-241405727(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr2:241405739-241405740(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr2:241405808-241405809(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr2:241405955-241405956(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960 chr2:241406106-241406107(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr2:241406313-241406314(+) m6A 3'UTR       24284625//25456834//24981863//26404942 chr2:241406340-241406341(+) m6A 3'UTR       24284625//25456834//24981863//26404942 chr2:241406355-241406356(+) m6A 3'UTR       24284625//25456834//24981863//26404942 chr2:241406537-241406538(+) m6A 3'UTR       24284625//25456834//24981863//26404942 chr2:241406563-241406564(+) m6A 3'UTR       24284625//25456834//24981863//26404942 chr2:241406596-241406597(+) m6A 3'UTR       24284625//25456834//24981863//26404942 chr2:241406687-241406688(+) m6A 3'UTR       24284625 chr2:241407019-241407020(+) m6A 3'UTR       24284625 chr2:241407049-241407050(+) m6A 3'UTR       24284625 chr2:241407161-241407162(+) m6A 3'UTR       26404942 chr2:241407250-241407251(+) m6A 3'UTR       26404942 chr2:241407279-241407280(+) m6A 3'UTR       26404942 chr2:241407326-241407327(+) m6A 3'UTR       24284625//26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GPC1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US22-3p
Interactor2: GPC1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg