Detail Information

Basic Information:


  VIRBase ID:  

VHID00262082

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-5p:           SLC7A14:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US22-5p SLC7A14
miRBase
Accession/Entrez ID		 MIMAT0028165 57709
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - PPP1R142

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC7A14
chr3:170210218(-) A-I      intronic
chr3:170180475(-) A-I      3'UTR
chr3:170181446(-) A-I      3'UTR
chr3:170181417(-) A-I      3'UTR
chr3:170181434(-) A-I      3'UTR
chr3:170180456(-) A-I      3'UTR
chr3:170180436(-) A-I      3'UTR
chr3:170180432(-) A-I      3'UTR
chr3:170178831(-) A-I      3'UTR
chr3:170178788(-) A-I      3'UTR
chr3:170178763(-) A-I      3'UTR
chr3:170180486(-) A-I      3'UTR
chr3:170181344(-) A-I      3'UTR
chr3:170181366(-) A-I      3'UTR
chr3:170181389(-) A-I      3'UTR
chr3:170181398(-) A-I      3'UTR
chr3:170181403(-) A-I      3'UTR
chr3:170181408(-) A-I      3'UTR

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC7A14
chr3:170184836-170184837(-) m6A 3'UTR       -
chr3:170184891-170184892(-) m6A CDS       -
chr3:170184896-170184897(-) m6A CDS       25456834
chr3:170184902-170184903(-) m6A CDS       25456834
chr3:170184931-170184932(-) m6A CDS       25456834
chr3:170184981-170184982(-) m6A CDS       25456834
chr3:170185002-170185003(-) m6A CDS       25456834
chr3:170198526-170198527(-) m6A CDS       -
chr3:170198571-170198572(-) m6A CDS       25456834
chr3:170198598-170198599(-) m6A CDS       25456834
chr3:170198616-170198617(-) m6A CDS       25456834//22575960
chr3:170244473-170244474(-) m6A CDS       25456834
chr3:170244555-170244556(-) m6A CDS       25456834
chr3:170244586-170244587(-) m6A CDS       25456834
chr3:170244604-170244605(-) m6A CDS       25456834
chr3:170244610-170244611(-) m6A CDS       25456834
chr3:170244635-170244636(-) m6A CDS       25456834
chr3:170244699-170244700(-) m6A CDS       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SLC7A14
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US22-5p
Interactor2: SLC7A14

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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