Detail Information

Basic Information:


  VIRBase ID:  

VHID00261763

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-5p:           ELP6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US22-5p ELP6
miRBase
Accession/Entrez ID		 MIMAT0028165 54859
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - C3orf75//TMEM103

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ELP6
chr3:47546687(-) A-I      intronic
chr3:47546980(-) A-I      intronic
chr3:47548650(-) A-I      intronic
chr3:47548799(-) A-I      intronic
chr3:47550317(-) A-I      intronic
chr3:47550419(-) A-I      intronic
chr3:47550512(-) A-I      intronic
chr3:47550676(-) A-I      intronic
chr3:47551390(-) A-I      intronic
chr3:47552177(-) A-I      intronic
chr3:47553808(-) A-I      intronic
chr3:47553902(-) A-I      intronic
chr3:47547023(-) A-I      intronic
chr3:47547018(-) A-I      intronic
chr3:47546987(-) A-I      intronic
chr3:47541152(-) A-I      intronic
chr3:47548768(-) A-I      intronic
chr3:47548729(-) A-I      intronic
chr3:47548673(-) A-I      intronic
chr3:47538071(-) A-I      intronic
chr3:47538082(-) A-I      intronic
chr3:47538145(-) A-I      intronic
chr3:47538152(-) A-I      intronic
chr3:47538155(-) A-I      intronic
chr3:47538163(-) A-I      intronic
chr3:47538164(-) A-I      intronic
chr3:47538179(-) A-I      intronic
chr3:47538265(-) A-I      intronic
chr3:47538275(-) A-I      intronic
chr3:47538932(-) A-I      intronic
chr3:47538942(-) A-I      intronic
chr3:47538965(-) A-I      intronic
chr3:47538994(-) A-I      intronic
chr3:47539100(-) A-I      intronic
chr3:47539156(-) A-I      intronic
chr3:47539158(-) A-I      intronic
chr3:47539172(-) A-I      intronic
chr3:47539236(-) A-I      intronic
chr3:47539239(-) A-I      intronic
chr3:47539256(-) A-I      intronic
chr3:47539417(-) A-I      intronic
chr3:47540611(-) A-I      intronic
chr3:47544247(-) A-I      intronic
chr3:47544273(-) A-I      intronic
chr3:47544303(-) A-I      intronic
chr3:47546211(-) A-I      intronic
chr3:47546227(-) A-I      intronic
chr3:47546560(-) A-I      intronic
chr3:47546355(-) A-I      intronic
chr3:47550526(-) A-I      intronic
chr3:47547362(-) A-I      intronic
chr3:47550256(-) A-I      intronic
chr3:47540741(-) A-I      intronic
chr3:47546991(-) A-I      intronic
chr3:47546228(-) A-I      intronic
chr3:47547158(-) A-I      intronic
chr3:47538059(-) A-I      intronic
chr3:47539335(-) A-I      intronic
chr3:47548739(-) A-I      intronic
chr3:47538123(-) A-I      intronic
chr3:47539030(-) A-I      intronic
chr3:47551440(-) A-I      intronic
chr3:47539298(-) A-I      intronic
chr3:47550393(-) A-I      intronic
chr3:47538125(-) A-I      intronic
chr3:47538923(-) A-I      intronic
chr3:47546328(-) A-I      intronic
chr3:47553979(-) A-I      intronic
chr3:47552221(-) A-I      intronic
chr3:47548743(-) A-I      intronic
chr3:47546444(-) A-I      intronic
chr3:47539322(-) A-I      intronic
chr3:47539300(-) A-I      intronic
chr3:47538058(-) A-I      intronic
chr3:47538184(-) A-I      intronic
chr3:47543778(-) A-I      intronic
chr3:47548468(-) A-I      intronic
chr3:47539015(-) A-I      intronic
chr3:47546293(-) A-I      intronic
chr3:47553978(-) A-I      intronic
chr3:47538129(-) A-I      intronic
chr3:47552149(-) A-I      intronic
chr3:47538198(-) A-I      intronic
chr3:47548789(-) A-I      intronic
chr3:47539390(-) A-I      intronic
chr3:47539054(-) A-I      intronic
chr3:47538216(-) A-I      intronic
chr3:47550521(-) A-I      intronic
chr3:47546263(-) A-I      intronic
chr3:47550387(-) A-I      intronic
chr3:47553930(-) A-I      intronic
chr3:47539419(-) A-I      intronic
chr3:47539334(-) A-I      intronic
chr3:47546674(-) A-I      intronic
chr3:47538959(-) A-I      intronic
chr3:47539171(-) A-I      intronic
chr3:47548751(-) A-I      intronic
chr3:47539338(-) A-I      intronic
chr3:47538091(-) A-I      intronic
chr3:47546276(-) A-I      intronic
chr3:47539399(-) A-I      intronic
chr3:47551376(-) A-I      intronic
chr3:47539227(-) A-I      intronic
chr3:47550403(-) A-I      intronic
chr3:47550640(-) A-I      intronic
chr3:47551337(-) A-I      intronic
chr3:47549074(-) A-I      intronic
chr3:47553768(-) A-I      intronic
chr3:47548723(-) A-I      intronic
chr3:47550651(-) A-I      intronic
chr3:47548804(-) A-I      intronic
chr3:47548618(-) A-I      intronic
chr3:47538122(-) A-I      intronic
chr3:47546242(-) A-I      intronic
chr3:47546937(-) A-I      intronic
chr3:47538991(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ELP6
chr3:47537321-47537322(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr3:47537362-47537363(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr3:47537371-47537372(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr3:47537450-47537451(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr3:47537509-47537510(-) Am 3'UTR       -
chr3:47537526-47537527(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr3:47537607-47537608(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22608085
chr3:47537666-47537667(-) m6A 3'UTR//CDS       24284625//24209618//27773535//27773536
chr3:47539917-47539918(-) m6A 3'UTR//CDS       24284625
chr3:47543076-47543077(-) m6A exon//intron       24284625//24981863
chr3:47543086-47543087(-) m6A exon//intron       24284625//24981863
chr3:47543092-47543093(-) m6A exon//intron       24284625//24981863
chr3:47543127-47543128(-) m6A CDS//exon//intron       24284625//24981863
chr3:47543145-47543146(-) m6A 3'UTR//CDS//exon       24284625//24981863
chr3:47543182-47543183(-) m6A 3'UTR//CDS//exon       24284625
chr3:47543275-47543276(-) m6A 3'UTR//CDS//exon       27773535
chr3:47543316-47543317(-) m6A 3'UTR//CDS//exon       27773535
chr3:47543323-47543324(-) m6A 3'UTR//CDS//exon       27773535
chr3:47554593-47554594(-) m6A 5'UTR//intron       24209618
chr3:47554674-47554675(-) m6A 5'UTR//intron       24209618//24981863
chr3:47554697-47554698(-) m6A 5'UTR//intron       24209618//24981863//22608085
chr3:47554870-47554871(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ELP6
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US22-5p
Interactor2: ELP6

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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