Basic Information:

  VIRBase ID:  

VHID00261554

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-5p:  MIMAT0028165          GMPPB:  NM_021971     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US22-5p	GMPPB
miRBase Accession/Entrez ID	MIMAT0028165	29925
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LGMDR19//MDDGA14//MDDGB14//MDDGC14

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GMPPB	chr3:49754323-49754324(-) m6A 3'UTR       - chr3:49754504-49754505(-) m6A 3'UTR       24284625//24209618//25456834//24981863 chr3:49754602-49754603(-) m6A 3'UTR       24284625//25456834//24981863//22608085 chr3:49754803-49754804(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085 chr3:49754829-49754830(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr3:49754842-49754843(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085 chr3:49754969-49754970(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr3:49755010-49755011(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr3:49755082-49755083(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr3:49755118-49755119(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:49755169-49755170(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085 chr3:49755217-49755218(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr3:49755248-49755249(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr3:49755310-49755311(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr3:49755382-49755383(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr3:49755634-49755635(-) m6A 3'UTR       24284625//24981863 chr3:49755854-49755855(-) m6A 3'UTR       24284625//25456834//24981863//22575960 chr3:49756083-49756084(-) m6A 3'UTR       24981863 chr3:49756310-49756311(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr3:49756332-49756333(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr3:49756394-49756395(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr3:49756610-49756611(-) m6A 3'UTR       24209618//24981863//22608085 chr3:49756620-49756621(-) m6A 3'UTR       24209618//24981863//22608085 chr3:49756704-49756705(-) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr3:49756833-49756834(-) m6A 3'UTR       24284625//24209618//24981863//27371828//22608085 chr3:49756873-49756874(-) m6A 3'UTR       24284625//24209618//24981863//27371828//22608085 chr3:49756946-49756947(-) m6A 3'UTR       24284625//24209618//24981863//27371828//22608085 chr3:49757022-49757023(-) m6A 3'UTR       24284625//24209618//24981863//27371828//22608085 chr3:49757053-49757054(-) m6A 3'UTR       24284625//24209618//24981863//27371828//22608085 chr3:49757125-49757126(-) m6A 3'UTR       24284625//24981863//27371828 chr3:49757180-49757181(-) m6A 3'UTR       24284625//24981863//27773535 chr3:49757269-49757270(-) m6A 3'UTR       24284625//24981863//27773535 chr3:49757334-49757335(-) m6A 3'UTR       24284625//24981863//27773535 chr3:49757346-49757347(-) m6A 3'UTR       24284625//24981863//27773535 chr3:49757366-49757367(-) m6A 3'UTR       24981863//27773535 chr3:49757435-49757436(-) m6A 3'UTR       27773535 chr3:49757578-49757579(-) m6A 3'UTR       24209618 chr3:49757805-49757806(-) m6A 3'UTR       27773535 chr3:49758158-49758159(-) m6A 3'UTR       24284625//27773535 chr3:49758351-49758352(-) m6A 3'UTR       24284625//25456834//27773535 chr3:49758509-49758510(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr3:49758530-49758531(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr3:49758593-49758594(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr3:49758681-49758682(-) m6A 3'UTR       24284625//24209618//27773535//27371828//22608085 chr3:49758995-49758996(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr3:49759034-49759035(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr3:49759054-49759055(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085 chr3:49759103-49759104(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr3:49759110-49759111(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr3:49759523-49759524(-) m6A CDS       24284625//22575960 chr3:49759554-49759555(-) m6A CDS       24284625//22575960 chr3:49760169-49760170(-) m6A CDS//exon       27773535 chr3:49760501-49760502(-) m6A CDS//exon       24284625 chr3:49760508-49760509(-) m6A CDS//exon       24284625 chr3:49760583-49760584(-) m6A exon//intron       24284625 chr3:49760589-49760590(-) m6A exon//intron       24284625 chr3:49760689-49760690(-) m6A CDS//exon       24284625 chr3:49760894-49760895(-) m6A CDS//exon       24284625 chr3:49761079-49761080(-) m6A CDS//exon       24284625//24209618 chr3:49761184-49761185(-) m6A 5'UTR//exon//intron       24284625//24209618//27371828//27773536 chr3:49761221-49761222(-) m6A 5'UTR//exon//intron       24284625//24209618//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GMPPB	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US22-5p
Interactor2: GMPPB

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg