Basic Information:

  VIRBase ID:  

VHID00260220

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US22-5p:  MIMAT0028165          ITGA1:  NM_181501     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US22-5p	ITGA1
miRBase Accession/Entrez ID	MIMAT0028165	3672
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD49a//VLA1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ITGA1	chr5:52225159(+) A-I      intronic chr5:52225158(+) A-I      intronic chr5:52128935(+) A-I      intronic chr5:52128941(+) A-I      intronic chr5:52128947(+) A-I      intronic chr5:52128951(+) A-I      intronic chr5:52121504(+) A-I      intronic chr5:52110050(+) A-I      intronic chr5:52121529(+) A-I      intronic chr5:52121499(+) A-I      intronic chr5:52225173(+) A-I      intronic chr5:52121498(+) A-I      intronic chr5:52225157(+) A-I      intronic chr5:52156222(+) A-I      intronic chr5:52156229(+) A-I      intronic chr5:52089474(+) A-I      intronic chr5:52156219(+) A-I      intronic chr5:52156204(+) A-I      intronic chr5:52156215(+) A-I      intronic chr5:52128975(+) A-I      intronic chr5:52128997(+) A-I      intronic chr5:52156194(+) A-I      intronic chr5:52127084(+) A-I      intronic chr5:52121542(+) A-I      intronic chr5:52121605(+) A-I      intronic chr5:52121734(+) A-I      intronic chr5:52125135(+) A-I      intronic chr5:52127190(+) A-I      intronic chr5:52156230(+) A-I      intronic chr5:52134846(+) A-I      intronic chr5:52138728(+) A-I      intronic chr5:52223675(+) A-I      intronic chr5:52127220(+) A-I      intronic chr5:52127202(+) A-I      intronic chr5:52128976(+) A-I      intronic chr5:52127096(+) A-I      intronic chr5:52134820(+) A-I      intronic chr5:52121591(+) A-I      intronic chr5:52180229(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ITGA1	chr5:52083850-52083851(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr5:52083862-52083863(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr5:52083868-52083869(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr5:52083903-52083904(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr5:52083938-52083939(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr5:52084022-52084023(+) m6A 5'UTR//exon       24209618//25456834//24981863//22575960 chr5:52084077-52084078(+) m6A 5'UTR//exon       24209618//25456834//22575960 chr5:52084084-52084085(+) m6A 5'UTR//exon       24209618//25456834//22575960 chr5:52084150-52084151(+) m6A 5'UTR//exon       24209618//25456834 chr5:52095965-52095966(+) m6A intron       24284625//24981863 chr5:52096029-52096030(+) m6A intron       24284625//24981863//22575960 chr5:52096121-52096122(+) m6A intron       24284625//24981863//22575960//22608085 chr5:52096182-52096183(+) m6A intron       24284625//22575960//22608085 chr5:52096247-52096248(+) m6A intron       24284625//25456834//24981863//22575960//22608085 chr5:52096259-52096260(+) m6A intron       24284625//25456834//24981863//22575960//22608085 chr5:52096301-52096302(+) m6A intron       24284625//25456834//24981863//22575960//22608085 chr5:52096372-52096373(+) m6A intron       24284625//25456834//24981863//22575960//22608085 chr5:52096483-52096484(+) m6A intron       24284625//24981863//22575960//22608085 chr5:52096724-52096725(+) m6A intron       24284625//26404942 chr5:52096788-52096789(+) m6A intron       24284625//26404942 chr5:52096909-52096910(+) m6A intron       24284625//22575960//22608085 chr5:52096920-52096921(+) m6A intron       24284625//22575960//22608085 chr5:52096934-52096935(+) m6A intron       24284625//24981863//22575960//22608085 chr5:52097259-52097260(+) m6A intron       24284625//24981863//22575960//22608085 chr5:52097318-52097319(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:52097379-52097380(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:52097400-52097401(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:52097516-52097517(+) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:52097577-52097578(+) m6A intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr5:52097631-52097632(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:52097682-52097683(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:52097695-52097696(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:52097714-52097715(+) m6A intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr5:52097832-52097833(+) m6A intron       24284625//24209618//24981863//27773535//22608085 chr5:52097844-52097845(+) m6A intron       24284625//24981863//27773535//22608085 chr5:52097851-52097852(+) m6A intron       24284625//24981863//27773535//22608085 chr5:52204824-52204825(+) Cm CDS//exon       - chr5:52214632-52214633(+) m6A CDS//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ITGA1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US22-5p
Interactor2: ITGA1

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg