Detail Information

Basic Information:


  VIRBase ID:  

VHID00259747

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:           TMEM242:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US4-3p TMEM242
miRBase
Accession/Entrez ID		 MIMAT0026628 729515
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - BM033//C6orf35

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMEM242
chr6:157714931(-) A-I      intronic
chr6:157714966(-) A-I      intronic
chr6:157714904(-) A-I      intronic
chr6:157714941(-) A-I      intronic
chr6:157714949(-) A-I      intronic
chr6:157714894(-) A-I      intronic
chr6:157733273(-) A-I      intronic
chr6:157733281(-) A-I      intronic
chr6:157733291(-) A-I      intronic
chr6:157714952(-) A-I      intronic
chr6:157714314(-) A-I      intronic
chr6:157714328(-) A-I      intronic
chr6:157722429(-) A-I      intronic
chr6:157722537(-) A-I      intronic
chr6:157739386(-) A-I      3'UTR
chr6:157739383(-) A-I      3'UTR
chr6:157722709(-) A-I      intronic
chr6:157722730(-) A-I      intronic
chr6:157722917(-) A-I      intronic
chr6:157722721(-) A-I      intronic
chr6:157722842(-) A-I      intronic
chr6:157722852(-) A-I      intronic
chr6:157722707(-) A-I      intronic
chr6:157722801(-) A-I      intronic
chr6:157722877(-) A-I      intronic
chr6:157714377(-) A-I      intronic
chr6:157722772(-) A-I      intronic
chr6:157737895(-) A-I      intronic
chr6:157722882(-) A-I      intronic
chr6:157722907(-) A-I      intronic
chr6:157722746(-) A-I      intronic
chr6:157722871(-) A-I      intronic
chr6:157722760(-) A-I      intronic
chr6:157722795(-) A-I      intronic
chr6:157714930(-) A-I      intronic
chr6:157722796(-) A-I      intronic
chr6:157739448(-) A-I      3'UTR
chr6:157739402(-) A-I      3'UTR
chr6:157739400(-) A-I      3'UTR
chr6:157739453(-) A-I      3'UTR
chr6:157714331(-) A-I      intronic
chr6:157722798(-) A-I      intronic
chr6:157714298(-) A-I      intronic
chr6:157714867(-) A-I      intronic
chr6:157714807(-) A-I      intronic
chr6:157737689(-) A-I      intronic
chr6:157737734(-) A-I      intronic
chr6:157737715(-) A-I      intronic
chr6:157722735(-) A-I      intronic
chr6:157737784(-) A-I      intronic
chr6:157715034(-) A-I      intronic
chr6:157737808(-) A-I      intronic
chr6:157715003(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMEM242
chr6:157722707(-) A-I intron -    22028664
chr6:157722709(-) A-I intron -    22028664
chr6:157722721(-) A-I intron -    22028664
chr6:157722730(-) A-I intron -    22028664
chr6:157722746(-) A-I intron -    22028664
chr6:157722760(-) A-I intron -    22028664
chr6:157722772(-) A-I intron -    22028664
chr6:157722795(-) A-I intron -    22028664
chr6:157722796(-) A-I intron -    22028664
chr6:157722798(-) A-I intron -    22028664
chr6:157722801(-) A-I intron -    22028664
chr6:157722840(-) A-I intron -    22028664
chr6:157722842(-) A-I intron -    22028664
chr6:157722852(-) A-I intron -    22028664
chr6:157722871(-) A-I intron -    22028664
chr6:157722877(-) A-I intron -    22028664
chr6:157722878(-) A-I intron -    22028664
chr6:157722882(-) A-I intron -    22028664
chr6:157722907(-) A-I intron -    22028664
chr6:157722917(-) A-I intron -    22028664

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMEM242
chr6:157710785-157710786(-) m6A 3'UTR       27773535
chr6:157710790-157710791(-) m6A 3'UTR       27773535
chr6:157712790-157712791(-) m6A 3'UTR       27773535
chr6:157712816-157712817(-) m6A 3'UTR       27773535
chr6:157712896-157712897(-) m6A 3'UTR       27773535
chr6:157713583-157713584(-) m6A 3'UTR       27773535
chr6:157713676-157713677(-) m6A 3'UTR       24981863//27773535//22608085
chr6:157713724-157713725(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//22608085
chr6:157713813-157713814(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr6:157713835-157713836(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr6:157713852-157713853(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr6:157713858-157713859(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr6:157713877-157713878(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr6:157713949-157713950(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr6:157713978-157713979(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22608085
chr6:157721148-157721149(-) m6A intron       -
chr6:157739216-157739217(-) m6A 3'UTR//intron       24284625//22608085
chr6:157744524-157744525(-) m6A CDS       24981863
chr6:157744532-157744533(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US4-3p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
TMEM242
Chromatin HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US4-3p
Interactor2: TMEM242

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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