Detail Information

Basic Information:


  VIRBase ID:  

VHID00259685

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:           C2orf68:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US4-3p C2orf68
miRBase
Accession/Entrez ID		 MIMAT0026628 388969
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - HCRCN81

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C2orf68
chr2:85836915(-) A-I      intronic
chr2:85836900(-) A-I      intronic
chr2:85837036(-) A-I      intronic
chr2:85837020(-) A-I      intronic
chr2:85836983(-) A-I      intronic
chr2:85836881(-) A-I      intronic
chr2:85836862(-) A-I      intronic
chr2:85837055(-) A-I      intronic
chr2:85836857(-) A-I      intronic
chr2:85836982(-) A-I      intronic
chr2:85836971(-) A-I      intronic
chr2:85837076(-) A-I      intronic
chr2:85837085(-) A-I      intronic
chr2:85836952(-) A-I      intronic
chr2:85837041(-) A-I      intronic
chr2:85837005(-) A-I      intronic
chr2:85836968(-) A-I      intronic
chr2:85836972(-) A-I      intronic
chr2:85837031(-) A-I      intronic
chr2:85836942(-) A-I      intronic
chr2:85836941(-) A-I      intronic
chr2:85836936(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C2orf68
chr2:85837275(-) A-I intron -    15342557
chr2:85837276(-) A-I intron -    15342557
chr2:85837286(-) A-I intron -    15342557
chr2:85837294(-) A-I intron -    15342557
chr2:85837302(-) A-I intron -    15342557
chr2:85837797(-) A-I intron -    15342557
chr2:85837798(-) A-I intron -    15342557
chr2:85837844(-) A-I intron -    15342557
chr2:85837871(-) A-I intron -    15342557   //22327324
chr2:85838020(-) A-I intron -    15342557
chr2:85838046(-) A-I intron -    15342557
chr2:85838154(-) A-I intron -    15342557
chr2:85838223(-) A-I intron -    15342557
chr2:85838241(-) A-I intron -    15342557   //22327324
chr2:85838292(-) A-I intron -    15342557
chr2:85838305(-) A-I intron -    15342557
chr2:85836941(-) A-I intron -    22327324
chr2:85836942(-) A-I intron -    22327324
chr2:85836968(-) A-I intron -    22327324
chr2:85838163(-) T-A intron -    21725310

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C2orf68
chr2:85833793-85833794(-) m6A 3'UTR       24981863//27773535//22608085
chr2:85833808-85833809(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:85833818-85833819(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:85833824-85833825(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:85833931-85833932(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22608085
chr2:85834000-85834001(-) m6A 3'UTR       24284625//25456834//24981863//27371828//22608085
chr2:85834102-85834103(-) m6A 3'UTR       24209618
chr2:85834123-85834124(-) m6A 3'UTR       24209618
chr2:85834947-85834948(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr2:85834993-85834994(-) m6A 3'UTR       24284625//24209618//27773535//22608085
chr2:85835151-85835152(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:85835184-85835185(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr2:85835194-85835195(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr2:85835212-85835213(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:85835232-85835233(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:85835288-85835289(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:85835312-85835313(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:85835335-85835336(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr2:85835342-85835343(-) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr2:85835435-85835436(-) m6A 3'UTR       24284625//24981863//22608085
chr2:85835471-85835472(-) m6A 3'UTR       24284625//24981863//22608085
chr2:85835516-85835517(-) m6A 3'UTR       24284625//24981863//22608085
chr2:85835626-85835627(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:85835774-85835775(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr2:85835786-85835787(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr2:85835926-85835927(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr2:85835962-85835963(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr2:85835983-85835984(-) m6A 3'UTR       24284625//24209618//24981863//22608085
chr2:85836681-85836682(-) m6A 3'UTR//CDS       27371828//27773536
chr2:85837908-85837909(-) m6A 3'UTR//intron       27773536
chr2:85837977-85837978(-) m6A 3'UTR//intron       -
chr2:85838243-85838244(-) m6A 3'UTR//intron       24209618
chr2:85838444-85838445(-) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22608085
chr2:85838619-85838620(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr2:85838668-85838669(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr2:85838714-85838715(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr2:85838819-85838820(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536
chr2:85839012-85839013(-) m6A CDS       24284625//24981863//27371828//27773536//22575960
chr2:85839042-85839043(-) m6A CDS       24284625//24981863//27371828//27773536//22575960//22608085
chr2:85839048-85839049(-) m6A CDS       24284625//24981863//27371828//27773536//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US4-3p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
C2orf68
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US4-3p
Interactor2: C2orf68

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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