Detail Information

Basic Information:


  VIRBase ID:  

VHID00259640

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:           TPRN:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US4-3p TPRN
miRBase
Accession/Entrez ID		 MIMAT0026628 286262
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - C9orf75//DFNB79

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TPRN
chr9:140090993(-) A-I      intronic
chr9:140091835(-) A-I      intronic
chr9:140091683(-) A-I      intronic
chr9:140091032(-) A-I      intronic
chr9:140090915(-) A-I      intronic
chr9:140091036(-) A-I      intronic
chr9:140091768(-) A-I      intronic
chr9:140091774(-) A-I      intronic
chr9:140090876(-) A-I      intronic
chr9:140091586(-) A-I      intronic
chr9:140097913(-) A-I      intronic
chr9:140097904(-) A-I      intronic
chr9:140091689(-) A-I      intronic
chr9:140090795(-) A-I      intronic
chr9:140090983(-) A-I      intronic
chr9:140091826(-) A-I      intronic
chr9:140091598(-) A-I      intronic
chr9:140090866(-) A-I      intronic
chr9:140090977(-) A-I      intronic
chr9:140091034(-) A-I      intronic
chr9:140090804(-) A-I      intronic
chr9:140090956(-) A-I      intronic
chr9:140091833(-) A-I      intronic
chr9:140090873(-) A-I      intronic
chr9:140091691(-) A-I      intronic
chr9:140091748(-) A-I      intronic
chr9:140090782(-) A-I      intronic
chr9:140090794(-) A-I      intronic
chr9:140091759(-) A-I      intronic
chr9:140091647(-) A-I      intronic
chr9:140091715(-) A-I      intronic
chr9:140090835(-) A-I      intronic
chr9:140091782(-) A-I      intronic
chr9:140090817(-) A-I      intronic
chr9:140091648(-) A-I      intronic
chr9:140090964(-) A-I      intronic
chr9:140091773(-) A-I      intronic
chr9:140090957(-) A-I      intronic
chr9:140090996(-) A-I      intronic
chr9:140091566(-) A-I      intronic
chr9:140091618(-) A-I      intronic
chr9:140091758(-) A-I      intronic
chr9:140090882(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TPRN
chr9:140091748(-) A-I intron -    21960545
chr9:140091758(-) A-I intron -    21960545
chr9:140091759(-) A-I intron -    21960545
chr9:140091758(-) A-G intron -    22484847
chr9:140091825(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TPRN
chr9:140086075-140086076(-) m6A 3'UTR//exon       24284625//24981863
chr9:140086085-140086086(-) m6A 3'UTR//exon       24284625//24981863
chr9:140086094-140086095(-) m6A 3'UTR//exon       24284625//24981863
chr9:140086164-140086165(-) m6A 3'UTR//exon       24284625
chr9:140086336-140086337(-) m6A 3'UTR//exon       24284625
chr9:140086494-140086495(-) m6A 3'UTR//exon       24284625//27371828
chr9:140086546-140086547(-) m6A 3'UTR//exon       24284625//27371828//27773536
chr9:140086594-140086595(-) m6A CDS//exon       24284625//27371828//27773536
chr9:140086936-140086937(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536
chr9:140087057-140087058(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828
chr9:140087109-140087110(-) m6A CDS//exon       24284625//25456834//27773535
chr9:140087211-140087212(-) m6A exon//intron       27773535
chr9:140088646-140088647(-) m6A exon//intron       -
chr9:140093622-140093623(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr9:140093632-140093633(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr9:140093750-140093751(-) m6A CDS//intron       24284625//27371828//27773536//22608085
chr9:140093778-140093779(-) m6A CDS//intron       24284625//27773535//27371828//27773536//22608085
chr9:140093899-140093900(-) Y CDS//intron       26075521
chr9:140093959-140093960(-) m6A CDS//intron       27371828//27773536
chr9:140094093-140094094(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536
chr9:140094186-140094187(-) m6A CDS//intron       24284625//25456834//24981863//27371828//22608085
chr9:140094222-140094223(-) m6A CDS//intron       24284625//25456834//24981863//27371828//22608085
chr9:140094238-140094239(-) m6A CDS//intron       24284625//25456834//24981863//27371828//22608085
chr9:140094364-140094365(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr9:140094425-140094426(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr9:140094987-140094988(-) m6A CDS//intron       27371828//27773536
chr9:140098577-140098578(-) m6A exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:140098612-140098613(-) m6A exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US4-3p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
TPRN
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US4-3p
Interactor2: TPRN

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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