Detail Information

Basic Information:


  VIRBase ID:  

VHID00259595

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:           FRMD3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US4-3p FRMD3
miRBase
Accession/Entrez ID		 MIMAT0026628 257019
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - 4.1O//EPB41L4O//EPB41LO//P410

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR FRMD3
chr9:85979309(-) A-I      intronic
chr9:86062108(-) A-I      intronic
chr9:86036996(-) A-I      intronic
chr9:86137751(-) A-I      intronic
chr9:86062103(-) A-I      intronic
chr9:85979306(-) A-I      intronic
chr9:85931890(-) A-I      intronic
chr9:86062119(-) A-I      intronic
chr9:85931875(-) A-I      intronic
chr9:86062133(-) A-I      intronic
chr9:85931876(-) A-I      intronic
chr9:86137617(-) A-I      intronic
chr9:85986490(-) A-I      intronic
chr9:86076679(-) A-I      intronic
chr9:86137611(-) A-I      intronic
chr9:86137575(-) A-I      intronic
chr9:86135868(-) A-I      intronic
chr9:85979285(-) A-I      intronic
chr9:86076671(-) A-I      intronic
chr9:86068889(-) A-I      intronic
chr9:86068741(-) A-I      intronic
chr9:86037000(-) A-I      intronic
chr9:86036977(-) A-I      intronic
chr9:86035928(-) A-I      intronic
chr9:85986504(-) A-I      intronic
chr9:85986503(-) A-I      intronic
chr9:85983943(-) A-I      intronic
chr9:85983940(-) A-I      intronic
chr9:85983934(-) A-I      intronic
chr9:86094495(-) A-I      intronic
chr9:86098627(-) A-I      intronic
chr9:86099470(-) A-I      intronic
chr9:85985824(-) A-I      intronic
chr9:86137750(-) A-I      intronic
chr9:86067950(-) A-I      intronic
chr9:86094466(-) A-I      intronic
chr9:85898383(-) A-I      intronic
chr9:86060094(-) A-I      intronic
chr9:86076834(-) A-I      intronic
chr9:85990895(-) A-I      intronic
chr9:86076875(-) A-I      intronic
chr9:85985664(-) A-I      intronic
chr9:86136370(-) A-I      intronic
chr9:85955026(-) A-I      intronic
chr9:86137521(-) A-I      intronic
chr9:85985661(-) A-I      intronic
chr9:86076833(-) A-I      intronic
chr9:85931903(-) A-I      intronic
chr9:86135783(-) A-I      intronic
chr9:86094420(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED FRMD3
chr9:85926832(-) A-I exon CDS    19478186

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase FRMD3
chr9:85861867-85861868(-) m6A 3'UTR//intron       24981863//27773535
chr9:85862020-85862021(-) m6A 3'UTR//intron       24981863
chr9:85862028-85862029(-) m6A 3'UTR//intron       24981863
chr9:85862060-85862061(-) m6A 3'UTR//intron       24981863
chr9:85862078-85862079(-) m6A 3'UTR//intron       24981863
chr9:85862094-85862095(-) m6A 3'UTR//intron       24981863
chr9:85862106-85862107(-) m6A 3'UTR//intron       24981863
chr9:85862131-85862132(-) m6A 3'UTR//intron       24981863
chr9:85863015-85863016(-) m6A CDS//exon       24981863
chr9:85863061-85863062(-) m6A CDS//exon       24981863
chr9:85863190-85863191(-) m6A CDS//exon       24981863//27773535
chr9:85863294-85863295(-) m6A CDS//exon       24981863
chr9:85863312-85863313(-) m6A CDS//exon       24981863
chr9:85882025-85882026(-) m6A CDS//intron       24981863
chr9:85882076-85882077(-) m6A CDS//intron       24981863
chr9:85882118-85882119(-) m6A 5'UTR//intron       24981863
chr9:85882127-85882128(-) m6A 5'UTR//intron       24981863
chr9:85882173-85882174(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US4-3p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
FRMD3
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US4-3p
Interactor2: FRMD3

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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