Detail Information

Basic Information:


  VIRBase ID:  

VHID00259549

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:           TAPT1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US4-3p TAPT1
miRBase
Accession/Entrez ID		 MIMAT0026628 202018
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CMVFR//OCLSBG

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TAPT1
chr4:16222575(-) A-I      intronic
chr4:16222865(-) A-I      intronic
chr4:16222766(-) A-I      intronic
chr4:16222950(-) A-I      intronic
chr4:16222953(-) A-I      intronic
chr4:16222339(-) A-I      intronic
chr4:16178147(-) A-I      intronic
chr4:16222285(-) A-I      intronic
chr4:16222556(-) A-I      intronic
chr4:16222263(-) A-I      intronic
chr4:16163166(-) A-I      3'UTR
chr4:16222916(-) A-I      intronic
chr4:16222965(-) A-I      intronic
chr4:16202008(-) A-I      intronic
chr4:16222877(-) A-I      intronic
chr4:16196522(-) A-I      intronic
chr4:16222206(-) A-I      intronic
chr4:16222942(-) A-I      intronic
chr4:16222952(-) A-I      intronic
chr4:16166327(-) A-I      intronic
chr4:16222260(-) A-I      intronic
chr4:16222189(-) A-I      intronic
chr4:16222209(-) A-I      intronic
chr4:16222636(-) A-I      intronic
chr4:16166326(-) A-I      intronic
chr4:16166346(-) A-I      intronic
chr4:16222820(-) A-I      intronic
chr4:16222861(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TAPT1
chr4:16192219(-) A-G intron -    22484847
chr4:16219900(-) A-C intron -    22484847
chr4:16222206(-) A-G intron -    22484847
chr4:16222209(-) A-G intron -    22484847
chr4:16222260(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TAPT1
chr4:16163731-16163732(-) m6A 3'UTR       24981863
chr4:16163983-16163984(-) m6A 3'UTR       27773535
chr4:16164026-16164027(-) m6A 3'UTR       27773535
chr4:16164101-16164102(-) Y 3'UTR       26075521
chr4:16164320-16164321(-) m6A 3'UTR       27773535
chr4:16164365-16164366(-) m6A 3'UTR       27773535//22608085
chr4:16164453-16164454(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr4:16164500-16164501(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr4:16164546-16164547(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr4:16164554-16164555(-) m6A 3'UTR       24284625//24981863//27773535//27371828//22608085
chr4:16164658-16164659(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:16164698-16164699(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr4:16164749-16164750(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr4:16164757-16164758(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr4:16164826-16164827(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr4:16164853-16164854(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr4:16164868-16164869(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr4:16164943-16164944(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr4:16164964-16164965(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr4:16164999-16165000(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr4:16165015-16165016(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr4:16165027-16165028(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr4:16165119-16165120(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr4:16165141-16165142(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr4:16168265-16168266(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr4:16168275-16168276(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr4:16227969-16227970(-) m6A CDS//exon//intron       24209618//27773536
chr4:16228081-16228082(-) m6A 5'UTR//intron       24209618//27773536
chr4:16228100-16228101(-) m6A 5'UTR//intron       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US4-3p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
TAPT1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US4-3p
Interactor2: TAPT1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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