Detail Information

Basic Information:


  VIRBase ID:  

VHID00259520

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:           PRICKLE2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US4-3p PRICKLE2
miRBase
Accession/Entrez ID		 MIMAT0026628 166336
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - EPM5

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PRICKLE2
chr3:64166436(-) A-I      intronic
chr3:64166422(-) A-I      intronic
chr3:64166413(-) A-I      intronic
chr3:64166412(-) A-I      intronic
chr3:64166391(-) A-I      intronic
chr3:64166388(-) A-I      intronic
chr3:64166382(-) A-I      intronic
chr3:64166320(-) A-I      intronic
chr3:64165019(-) A-I      intronic
chr3:64164956(-) A-I      intronic
chr3:64164913(-) A-I      intronic
chr3:64132411(-) A-I      intronic
chr3:64164890(-) A-I      intronic
chr3:64160534(-) A-I      intronic
chr3:64192724(-) A-I      intronic
chr3:64167971(-) A-I      intronic
chr3:64149931(-) A-I      intronic
chr3:64164845(-) A-I      intronic
chr3:64163040(-) A-I      intronic
chr3:64163026(-) A-I      intronic
chr3:64160480(-) A-I      intronic
chr3:64132163(-) A-I      intronic
chr3:64163017(-) A-I      intronic
chr3:64163008(-) A-I      intronic
chr3:64162992(-) A-I      intronic
chr3:64128191(-) A-I      intronic
chr3:64162959(-) A-I      intronic
chr3:64162950(-) A-I      intronic
chr3:64162917(-) A-I      intronic
chr3:64128182(-) A-I      intronic
chr3:64128047(-) A-I      intronic
chr3:64160452(-) A-I      intronic
chr3:64160444(-) A-I      intronic
chr3:64156537(-) A-I      intronic
chr3:64156439(-) A-I      intronic
chr3:64128183(-) A-I      intronic
chr3:64151397(-) A-I      intronic
chr3:64132175(-) A-I      intronic
chr3:64160491(-) A-I      intronic
chr3:64162949(-) A-I      intronic
chr3:64160521(-) A-I      intronic
chr3:64156339(-) A-I      intronic
chr3:64170375(-) A-I      intronic
chr3:64168051(-) A-I      intronic
chr3:64166278(-) A-I      intronic
chr3:64128125(-) A-I      intronic
chr3:64163081(-) A-I      intronic
chr3:64168050(-) A-I      intronic
chr3:64168006(-) A-I      intronic
chr3:64166314(-) A-I      intronic
chr3:64166301(-) A-I      intronic
chr3:64149850(-) A-I      intronic
chr3:64166403(-) A-I      intronic
chr3:64149910(-) A-I      intronic
chr3:64128211(-) A-I      intronic
chr3:64128119(-) A-I      intronic
chr3:64166251(-) A-I      intronic
chr3:64149953(-) A-I      intronic
chr3:64163084(-) A-I      intronic
chr3:64132238(-) A-I      intronic
chr3:64167983(-) A-I      intronic
chr3:64151351(-) A-I      intronic
chr3:64128095(-) A-I      intronic
chr3:64132230(-) A-I      intronic
chr3:64128079(-) A-I      intronic
chr3:64168068(-) A-I      intronic
chr3:64167912(-) A-I      intronic
chr3:64149970(-) A-I      intronic
chr3:64151441(-) A-I      intronic
chr3:64132260(-) A-I      intronic
chr3:64128166(-) A-I      intronic
chr3:64168055(-) A-I      intronic
chr3:64164825(-) A-I      intronic
chr3:64163016(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PRICKLE2
chr3:64149953(-) A-G intron -    22484847
chr3:64151404(-) A-G intron -    22484847
chr3:64168068(-) A-G intron -    22484847
chr3:64168176(-) C-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PRICKLE2
chr3:64082115-64082116(-) m6A 3'UTR       27773535
chr3:64082266-64082267(-) m6A 3'UTR       24981863
chr3:64083252-64083253(-) m6A 3'UTR       24981863
chr3:64083298-64083299(-) m6A 3'UTR       24981863
chr3:64083307-64083308(-) m6A 3'UTR       24981863
chr3:64083340-64083341(-) m6A 3'UTR       24981863
chr3:64083476-64083477(-) m6A 3'UTR       24209618//24981863//27773535
chr3:64083483-64083484(-) m6A 3'UTR       24209618//24981863//27773535
chr3:64083495-64083496(-) m6A 3'UTR       24209618//24981863//27773535
chr3:64083558-64083559(-) m6A 3'UTR       24209618//24981863//27773535
chr3:64083574-64083575(-) m6A 3'UTR       24209618//24981863//27773535
chr3:64083637-64083638(-) m6A 3'UTR       24209618//24981863//27773535
chr3:64083660-64083661(-) m6A 3'UTR       24209618//24981863//27773535
chr3:64083704-64083705(-) m6A 3'UTR       24209618//24981863//27773535
chr3:64083709-64083710(-) m6A 3'UTR       24981863//27773535
chr3:64084670-64084671(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr3:64084742-64084743(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr3:64084756-64084757(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr3:64084777-64084778(-) m6A CDS       24209618//24981863//26404942//27773535//22608085
chr3:64084882-64084883(-) m6A CDS       24209618//25456834//24981863
chr3:64084963-64084964(-) m6A CDS       24209618//25456834//24981863
chr3:64084973-64084974(-) m6A CDS       24209618//25456834//24981863//22608085
chr3:64085000-64085001(-) m6A CDS       24209618//25456834//24981863//22608085
chr3:64085010-64085011(-) m6A CDS       24209618//25456834//24981863//22608085
chr3:64085033-64085034(-) m6A CDS       24209618//25456834//24981863//22608085
chr3:64085096-64085097(-) m6A CDS       24209618//25456834//24981863//22608085
chr3:64085366-64085367(-) m6A CDS       24209618//25456834//24981863
chr3:64085402-64085403(-) m6A CDS       24209618//25456834//24981863
chr3:64085528-64085529(-) m6A CDS       24209618//25456834//24981863//26404942
chr3:64132550-64132551(-) m6A CDS       24209618//24981863
chr3:64132570-64132571(-) m6A CDS       24209618//24981863
chr3:64132607-64132608(-) m6A CDS       24209618//24981863//27773535
chr3:64132685-64132686(-) m6A CDS       24209618//24981863//27773535
chr3:64132753-64132754(-) m6A CDS       24209618//24981863//27773535
chr3:64132788-64132789(-) m6A CDS       24209618//24981863
chr3:64132889-64132890(-) m6A CDS       24209618//24981863
chr3:64132931-64132932(-) m6A CDS       24209618//24981863
chr3:64132936-64132937(-) m6A CDS       24209618//24981863
chr3:64132951-64132952(-) m6A CDS       24209618//24981863
chr3:64132993-64132994(-) m6A CDS       24209618//24981863
chr3:64133012-64133013(-) m6A CDS       24209618//24981863
chr3:64133035-64133036(-) m6A CDS       24209618//24981863
chr3:64133056-64133057(-) m6A CDS       24209618//24981863
chr3:64133107-64133108(-) m6A CDS       24209618//24981863
chr3:64133137-64133138(-) m6A CDS       24981863
chr3:64133221-64133222(-) m6A CDS       24981863
chr3:64210652-64210653(-) m6A 5'UTR//intron       24981863
chr3:64210658-64210659(-) m6A 5'UTR//intron       24981863
chr3:64430235-64430236(-) m6A CDS       -
chr3:64431021-64431022(-) m6A CDS       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US4-3p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
PRICKLE2
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US4-3p
Interactor2: PRICKLE2

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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