Detail Information

Basic Information:


  VIRBase ID:  

VHID00259515

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:           IFNLR1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US4-3p IFNLR1
miRBase
Accession/Entrez ID		 MIMAT0026628 163702
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CRF2/12//IFNLR//IL-28R1//IL28RA//LICR2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IFNLR1
chr1:24499438(-) A-I      intronic
chr1:24499417(-) A-I      intronic
chr1:24499445(-) A-I      intronic
chr1:24499440(-) A-I      intronic
chr1:24499423(-) A-I      intronic
chr1:24499458(-) A-I      intronic
chr1:24499461(-) A-I      intronic
chr1:24510042(-) A-I      intronic
chr1:24509936(-) A-I      intronic
chr1:24509298(-) A-I      intronic
chr1:24509288(-) A-I      intronic
chr1:24509278(-) A-I      intronic
chr1:24506760(-) A-I      intronic
chr1:24506725(-) A-I      intronic
chr1:24506675(-) A-I      intronic
chr1:24498418(-) A-I      intronic
chr1:24497043(-) A-I      intronic
chr1:24504731(-) A-I      intronic
chr1:24497032(-) A-I      intronic
chr1:24497029(-) A-I      intronic
chr1:24497028(-) A-I      intronic
chr1:24504690(-) A-I      intronic
chr1:24500277(-) A-I      intronic
chr1:24498447(-) A-I      intronic
chr1:24505583(-) A-I      intronic
chr1:24498419(-) A-I      intronic
chr1:24506552(-) A-I      intronic
chr1:24498568(-) A-I      intronic
chr1:24500596(-) A-I      intronic
chr1:24498101(-) A-I      intronic
chr1:24509815(-) A-I      intronic
chr1:24505528(-) A-I      intronic
chr1:24509896(-) A-I      intronic
chr1:24506649(-) A-I      intronic
chr1:24500679(-) A-I      intronic
chr1:24510509(-) A-I      intronic
chr1:24500708(-) A-I      intronic
chr1:24505586(-) A-I      intronic
chr1:24498141(-) A-I      intronic
chr1:24499385(-) A-I      intronic
chr1:24504718(-) A-I      intronic
chr1:24498075(-) A-I      intronic
chr1:24498064(-) A-I      intronic
chr1:24500696(-) A-I      intronic
chr1:24505716(-) A-I      intronic
chr1:24499411(-) A-I      intronic
chr1:24505724(-) A-I      intronic
chr1:24506652(-) A-I      intronic
chr1:24505665(-) A-I      intronic
chr1:24497144(-) A-I      intronic
chr1:24490350(-) A-I      intronic
chr1:24506704(-) A-I      intronic
chr1:24489548(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IFNLR1
chr1:24483178-24483179(-) m6A 3'UTR       25456834//24981863//27773535
chr1:24483229-24483230(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr1:24483236-24483237(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr1:24483259-24483260(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr1:24483272-24483273(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr1:24483296-24483297(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr1:24483306-24483307(-) m6A 3'UTR       25456834//24981863//27773535//22608085
chr1:24483396-24483397(-) m6A 3'UTR       27773535
chr1:24483547-24483548(-) m6A 3'UTR       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24483567-24483568(-) m6A 3'UTR       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24483645-24483646(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24483656-24483657(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24483663-24483664(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24483704-24483705(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24483771-24483772(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24483790-24483791(-) m6A 3'UTR//CDS       25456834//27773535//27371828//27773536//22608085
chr1:24483884-24483885(-) m6A 3'UTR//CDS       25456834//27773535//27371828//27773536//22608085
chr1:24483986-24483987(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24483998-24483999(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24484022-24484023(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24484085-24484086(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24484147-24484148(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24484184-24484185(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24484220-24484221(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24484236-24484237(-) m6A 3'UTR//CDS       25456834//24981863//27773535//27371828//27773536//22608085
chr1:24484291-24484292(-) m6A 3'UTR//CDS       25456834//27773535//27371828//27773536
chr1:24484333-24484334(-) m6A CDS//intron       25456834//27773535//27371828//27773536
chr1:24484369-24484370(-) m6A CDS//intron       25456834//27773535//27773536
chr1:24486035-24486036(-) m6A CDS       25456834//24981863
chr1:24486057-24486058(-) m6A CDS       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US4-3p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
IFNLR1
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US4-3p
Interactor2: IFNLR1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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