Basic Information:

  VIRBase ID:  

VHID00259323

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:  MIMAT0026628          BOD1:  NR_164701     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US4-3p	BOD1
miRBase Accession/Entrez ID	MIMAT0026628	91272
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAM44B

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	BOD1	chr5:173034679-173034680(-) m6A 3'UTR       27773535 chr5:173034696-173034697(-) m6A 3'UTR       27773535 chr5:173034728-173034729(-) m6A 3'UTR       27773535 chr5:173034823-173034824(-) m6A 3'UTR       24284625//25456834//26404942//27773535//22608085 chr5:173034909-173034910(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:173034927-173034928(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:173034971-173034972(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:173034982-173034983(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:173034990-173034991(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:173035008-173035009(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:173035037-173035038(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:173035054-173035055(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chr5:173035220-173035221(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr5:173035284-173035285(-) m6A 3'UTR//CDS//exon       27773535 chr5:173036251-173036252(-) m6A CDS//exon//intron       27773535 chr5:173036272-173036273(-) m6A CDS//exon//intron       27773535 chr5:173036379-173036380(-) m6A CDS//exon//intron       27773535 chr5:173036410-173036411(-) m6A CDS//exon//intron       27773535 chr5:173036471-173036472(-) m6A exon//intron       27773535 chr5:173043478-173043479(-) m1A 5'UTR//exon       26863196//26863410

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US4-3p	Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
	BOD1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US4-3p
Interactor2: BOD1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg