Basic Information:

  VIRBase ID:  

VHID00259173

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:  MIMAT0026628          UBTD1:  NM_024954     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US4-3p	UBTD1
miRBase Accession/Entrez ID	MIMAT0026628	80019
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	UBTD1	chr10:99297662(+) A-I      intronic chr10:99297644(+) A-I      intronic chr10:99297663(+) A-I      intronic chr10:99329575(+) A-I      intronic chr10:99276277(+) A-I      intronic chr10:99306164(+) A-I      intronic chr10:99325323(+) A-I      intronic chr10:99322008(+) A-I      intronic chr10:99296010(+) A-I      intronic chr10:99321966(+) A-I      intronic chr10:99286511(+) A-I      intronic chr10:99291191(+) A-I      intronic chr10:99292247(+) A-I      intronic chr10:99293573(+) A-I      intronic chr10:99295459(+) A-I      intronic chr10:99295490(+) A-I      intronic chr10:99295491(+) A-I      intronic chr10:99295949(+) A-I      intronic chr10:99297994(+) A-I      intronic chr10:99301609(+) A-I      intronic chr10:99301621(+) A-I      intronic chr10:99301727(+) A-I      intronic chr10:99304919(+) A-I      intronic chr10:99325706(+) A-I      intronic chr10:99304959(+) A-I      intronic chr10:99306084(+) A-I      intronic chr10:99306114(+) A-I      intronic chr10:99324460(+) A-I      intronic chr10:99324504(+) A-I      intronic chr10:99325294(+) A-I      intronic chr10:99327296(+) A-I      intronic chr10:99327322(+) A-I      intronic chr10:99295189(+) A-I      intronic chr10:99325364(+) A-I      intronic chr10:99295775(+) A-I      intronic chr10:99297606(+) A-I      intronic chr10:99326967(+) A-I      intronic chr10:99295568(+) A-I      intronic chr10:99326871(+) A-I      intronic chr10:99297987(+) A-I      intronic chr10:99301113(+) A-I      intronic chr10:99305785(+) A-I      intronic chr10:99322017(+) A-I      intronic chr10:99325366(+) A-I      intronic chr10:99295805(+) A-I      intronic chr10:99296011(+) A-I      intronic chr10:99301083(+) A-I      intronic chr10:99321974(+) A-I      intronic chr10:99313006(+) A-I      intronic chr10:99291195(+) A-I      intronic chr10:99300979(+) A-I      intronic chr10:99262908(+) A-I      intronic chr10:99306200(+) A-I      intronic chr10:99296023(+) A-I      intronic chr10:99305637(+) A-I      intronic chr10:99312988(+) A-I      intronic chr10:99300956(+) A-I      intronic chr10:99307452(+) A-I      intronic chr10:99325274(+) A-I      intronic chr10:99325524(+) A-I      intronic chr10:99293559(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	UBTD1	chr10:99258942-99258943(+) m6A 5'UTR       24284625 chr10:99258980-99258981(+) m6A CDS       24284625//24981863 chr10:99259010-99259011(+) m6A CDS       24284625//24981863 chr10:99327766-99327767(+) m6A CDS       24284625//24981863 chr10:99329969-99329970(+) m6A CDS       24284625 chr10:99330194-99330195(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr10:99330214-99330215(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr10:99330275-99330276(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr10:99330291-99330292(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:99330410-99330411(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:99330449-99330450(+) Y 3'UTR       26075521 chr10:99330506-99330507(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr10:99330717-99330718(+) m6A 3'UTR       - chr10:99330810-99330811(+) m6A 3'UTR       - chr10:99330917-99330918(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US4-3p	Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
	UBTD1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US4-3p
Interactor2: UBTD1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg