Detail Information

Basic Information:


  VIRBase ID:  

VHID00258957

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:           EXOC2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US4-3p EXOC2
miRBase
Accession/Entrez ID		 MIMAT0026628 55770
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - SEC5//SEC5L1//Sec5p

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR EXOC2
chr6:687410(-) A-I      intronic
chr6:687387(-) A-I      intronic
chr6:687256(-) A-I      intronic
chr6:686108(-) A-I      intronic
chr6:686099(-) A-I      intronic
chr6:671191(-) A-I      intronic
chr6:671174(-) A-I      intronic
chr6:558691(-) A-I      intronic
chr6:558730(-) A-I      intronic
chr6:671165(-) A-I      intronic
chr6:658863(-) A-I      intronic
chr6:658841(-) A-I      intronic
chr6:658840(-) A-I      intronic
chr6:658830(-) A-I      intronic
chr6:538892(-) A-I      intronic
chr6:651234(-) A-I      intronic
chr6:561678(-) A-I      intronic
chr6:561724(-) A-I      intronic
chr6:651169(-) A-I      intronic
chr6:631476(-) A-I      intronic
chr6:616826(-) A-I      intronic
chr6:588625(-) A-I      intronic
chr6:687309(-) A-I      intronic
chr6:671194(-) A-I      intronic
chr6:687327(-) A-I      intronic
chr6:687295(-) A-I      intronic
chr6:687240(-) A-I      intronic
chr6:616881(-) A-I      intronic
chr6:631475(-) A-I      intronic
chr6:616920(-) A-I      intronic
chr6:561653(-) A-I      intronic
chr6:538817(-) A-I      intronic
chr6:540130(-) A-I      intronic
chr6:487416(-) A-I      intronic
chr6:690244(-) A-I      intronic
chr6:651532(-) A-I      intronic
chr6:561723(-) A-I      intronic
chr6:561779(-) A-I      intronic
chr6:687386(-) A-I      intronic
chr6:588528(-) A-I      intronic
chr6:687455(-) A-I      intronic
chr6:651571(-) A-I      intronic
chr6:654770(-) A-I      intronic
chr6:687305(-) A-I      intronic
chr6:558726(-) A-I      intronic
chr6:487437(-) A-I      intronic
chr6:616923(-) A-I      intronic
chr6:558577(-) A-I      intronic
chr6:558697(-) A-I      intronic
chr6:540227(-) A-I      intronic
chr6:570305(-) A-I      intronic
chr6:538963(-) A-I      intronic
chr6:690697(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED EXOC2
chr6:558697(-) A-G intron -    22484847
chr6:558726(-) A-G intron -    22484847
chr6:561723(-) A-G intron -    22484847
chr6:561779(-) A-G intron -    22484847
chr6:561780(-) A-G intron -    22484847
chr6:616920(-) A-G intron -    22484847
chr6:616923(-) A-G intron -    22484847
chr6:677601(-) A-G intron -    22484847
chr6:690697(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase EXOC2
chr6:485603-485604(-) m6A 3'UTR       24284625//24981863//22608085
chr6:485672-485673(-) m6A 3'UTR       24284625//24981863//22608085
chr6:485714-485715(-) m6A 3'UTR       24284625//22608085
chr6:485747-485748(-) m6A 3'UTR       24284625//22608085
chr6:486197-486198(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:486217-486218(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:486244-486245(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:486277-486278(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:486581-486582(-) m6A 3'UTR       24981863//22608085
chr6:486624-486625(-) m6A 3'UTR       24981863//22608085
chr6:486675-486676(-) m6A CDS       24981863
chr6:599206-599207(-) m6A CDS       24981863//27773535
chr6:610099-610100(-) m6A CDS       24981863//27773535
chr6:610116-610117(-) m6A CDS       24981863//27773535
chr6:610164-610165(-) m6A CDS       24981863
chr6:656177-656178(-) m6A intron       25456834//24981863//27773535
chr6:656218-656219(-) m6A intron       25456834//24981863//27773535//22608085
chr6:656249-656250(-) m6A intron       25456834//24981863//27773535//22608085
chr6:656279-656280(-) m6A intron       25456834//24981863//27773535//22608085
chr6:656285-656286(-) m6A intron       25456834//24981863//27773535//22608085
chr6:656318-656319(-) m6A intron       25456834//24981863//27773535//22608085
chr6:656393-656394(-) m6A intron       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US4-3p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
EXOC2
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US4-3p
Interactor2: EXOC2

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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