Detail Information

Basic Information:


  VIRBase ID:  

VHID00258765

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:           LSM1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-US4-3p LSM1
miRBase
Accession/Entrez ID		 MIMAT0026628 27257
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CASM//YJL124C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LSM1
chr8:38025608(-) A-I      intronic
chr8:38021649(-) A-I      intronic
chr8:38021658(-) A-I      intronic
chr8:38030000(-) A-I      intronic
chr8:38030004(-) A-I      intronic
chr8:38030022(-) A-I      intronic
chr8:38021737(-) A-I      intronic
chr8:38028981(-) A-I      intronic
chr8:38021741(-) A-I      intronic
chr8:38025684(-) A-I      intronic
chr8:38021746(-) A-I      intronic
chr8:38021767(-) A-I      intronic
chr8:38021828(-) A-I      intronic
chr8:38021834(-) A-I      intronic
chr8:38022129(-) A-I      intronic
chr8:38025746(-) A-I      intronic
chr8:38025751(-) A-I      intronic
chr8:38025830(-) A-I      intronic
chr8:38026009(-) A-I      intronic
chr8:38026033(-) A-I      intronic
chr8:38022297(-) A-I      intronic
chr8:38027734(-) A-I      intronic
chr8:38027812(-) A-I      intronic
chr8:38028980(-) A-I      intronic
chr8:38022321(-) A-I      intronic
chr8:38022759(-) A-I      intronic
chr8:38023833(-) A-I      intronic
chr8:38023842(-) A-I      intronic
chr8:38026057(-) A-I      intronic
chr8:38027645(-) A-I      intronic
chr8:38025618(-) A-I      intronic
chr8:38025644(-) A-I      intronic
chr8:38027656(-) A-I      intronic
chr8:38027679(-) A-I      intronic
chr8:38021656(-) A-I      intronic
chr8:38029141(-) A-I      intronic
chr8:38029836(-) A-I      intronic
chr8:38029987(-) A-I      intronic
chr8:38030121(-) A-I      intronic
chr8:38030128(-) A-I      intronic
chr8:38032336(-) A-I      intronic
chr8:38032420(-) A-I      intronic
chr8:38032458(-) A-I      intronic
chr8:38021640(-) A-I      intronic
chr8:38021645(-) A-I      intronic
chr8:38023795(-) A-I      intronic
chr8:38023888(-) A-I      intronic
chr8:38023887(-) A-I      intronic
chr8:38032480(-) A-I      intronic
chr8:38027723(-) A-I      intronic
chr8:38025652(-) A-I      intronic
chr8:38023115(-) A-I      intronic
chr8:38021697(-) A-I      intronic
chr8:38025346(-) A-I      intronic
chr8:38030048(-) A-I      intronic
chr8:38021665(-) A-I      intronic
chr8:38025399(-) A-I      intronic
chr8:38023342(-) A-I      intronic
chr8:38025492(-) A-I      intronic
chr8:38030071(-) A-I      intronic
chr8:38027846(-) A-I      intronic
chr8:38025577(-) A-I      intronic
chr8:38025852(-) A-I      intronic
chr8:38021766(-) A-I      intronic
chr8:38032737(-) A-I      intronic
chr8:38025129(-) A-I      intronic
chr8:38025547(-) A-I      intronic
chr8:38021684(-) A-I      intronic
chr8:38021710(-) A-I      intronic
chr8:38025680(-) A-I      intronic
chr8:38025926(-) A-I      intronic
chr8:38023750(-) A-I      intronic
chr8:38032430(-) A-I      intronic
chr8:38032293(-) A-I      intronic
chr8:38023250(-) A-I      intronic
chr8:38023384(-) A-I      intronic
chr8:38024963(-) A-I      intronic
chr8:38025121(-) A-I      intronic
chr8:38028982(-) A-I      intronic
chr8:38021776(-) A-I      intronic
chr8:38032459(-) A-I      intronic
chr8:38024958(-) A-I      intronic
chr8:38025552(-) A-I      intronic
chr8:38021669(-) A-I      intronic
chr8:38025332(-) A-I      intronic
chr8:38025350(-) A-I      intronic
chr8:38022401(-) A-I      intronic
chr8:38022433(-) A-I      intronic
chr8:38025356(-) A-I      intronic
chr8:38025774(-) A-I      intronic
chr8:38023376(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LSM1
chr8:38021697(-) A-G intron -    22484847
chr8:38021710(-) A-G intron -    22484847
chr8:38022840(-) A-G intron -    22484847
chr8:38025350(-) A-G intron -    22484847
chr8:38025356(-) A-G intron -    22484847
chr8:38025547(-) A-G intron -    22484847
chr8:38025680(-) A-G intron -    22484847
chr8:38025926(-) A-G intron -    22484847
chr8:38030071(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LSM1
chr8:38020896-38020897(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr8:38020974-38020975(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr8:38020986-38020987(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr8:38021096-38021097(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828//22608085
chr8:38021233-38021234(-) m6A 3'UTR//CDS//exon       27773535//27371828
chr8:38021276-38021277(-) m6A 3'UTR//CDS//exon       27773535//27371828
chr8:38021283-38021284(-) m6A 3'UTR//CDS//exon       27773535
chr8:38021295-38021296(-) m6A 3'UTR//CDS//exon       24981863//27773535
chr8:38027414-38027415(-) m6A 3'UTR//CDS//exon//intron       27773535
chr8:38027431-38027432(-) m6A 3'UTR//CDS//exon//intron       27773535
chr8:38028527-38028528(-) m6A CDS//intron       27773535
chr8:38034093-38034094(-) m6A 5'UTR//exon       24981863
chr8:38034171-38034172(-) m6A 5'UTR//exon       24981863
chr8:38034189-38034190(-) m6A 5'UTR//exon       24981863
chr8:38034236-38034237(-) m6A exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hcmv-miR-US4-3p
Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
LSM1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-US4-3p
Interactor2: LSM1

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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