Basic Information:

  VIRBase ID:  

VHID00258752

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:  MIMAT0026628          RPS6KC1:  NR_146207     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US4-3p	RPS6KC1
miRBase Accession/Entrez ID	MIMAT0026628	26750
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	humS6PKh1//RPK118//RSKL1//S6K-delta-1//S6PKh1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RPS6KC1	chr1:213352122(+) A-I      intronic chr1:213380178(+) A-I      intronic chr1:213380209(+) A-I      intronic chr1:213330812(+) A-I      intronic chr1:213317680(+) A-I      intronic chr1:213399472(+) A-I      intronic chr1:213244601(+) A-I      intronic chr1:213265759(+) A-I      intronic chr1:213399311(+) A-I      intronic chr1:213266652(+) A-I      intronic chr1:213382868(+) A-I      intronic chr1:213266653(+) A-I      intronic chr1:213266686(+) A-I      intronic chr1:213398932(+) A-I      intronic chr1:213330810(+) A-I      intronic chr1:213398861(+) A-I      intronic chr1:213330757(+) A-I      intronic chr1:213398832(+) A-I      intronic chr1:213269767(+) A-I      intronic chr1:213398807(+) A-I      intronic chr1:213393869(+) A-I      intronic chr1:213380339(+) A-I      intronic chr1:213271558(+) A-I      intronic chr1:213318316(+) A-I      intronic chr1:213393855(+) A-I      intronic chr1:213380402(+) A-I      intronic chr1:213393852(+) A-I      intronic chr1:213269884(+) A-I      intronic chr1:213381251(+) A-I      intronic chr1:213362560(+) A-I      intronic chr1:213269886(+) A-I      intronic chr1:213318307(+) A-I      intronic chr1:213269887(+) A-I      intronic chr1:213318208(+) A-I      intronic chr1:213378106(+) A-I      intronic chr1:213317781(+) A-I      intronic chr1:213367133(+) A-I      intronic chr1:213393764(+) A-I      intronic chr1:213294399(+) A-I      intronic chr1:213445121(+) A-I      intronic chr1:213393763(+) A-I      intronic chr1:213393734(+) A-I      intronic chr1:213269928(+) A-I      intronic chr1:213393709(+) A-I      intronic chr1:213382993(+) A-I      intronic chr1:213380409(+) A-I      intronic chr1:213407502(+) A-I      intronic chr1:213380417(+) A-I      intronic chr1:213270545(+) A-I      intronic chr1:213352263(+) A-I      intronic chr1:213270575(+) A-I      intronic chr1:213270576(+) A-I      intronic chr1:213404055(+) A-I      intronic chr1:213270589(+) A-I      intronic chr1:213381143(+) A-I      intronic chr1:213382959(+) A-I      intronic chr1:213352272(+) A-I      intronic chr1:213352325(+) A-I      intronic chr1:213302482(+) A-I      intronic chr1:213382941(+) A-I      intronic chr1:213317682(+) A-I      intronic chr1:213378255(+) A-I      intronic chr1:213362704(+) A-I      intronic chr1:213351799(+) A-I      intronic chr1:213351823(+) A-I      intronic chr1:213428484(+) A-I      intronic chr1:213382917(+) A-I      intronic chr1:213428492(+) A-I      intronic chr1:213399498(+) A-I      intronic chr1:213271575(+) A-I      intronic chr1:213431394(+) A-I      intronic chr1:213432719(+) A-I      intronic chr1:213381188(+) A-I      intronic chr1:213330749(+) A-I      intronic chr1:213351763(+) A-I      intronic chr1:213227248(+) A-I      intronic chr1:213380407(+) A-I      intronic chr1:213378254(+) A-I      intronic chr1:213378249(+) A-I      intronic chr1:213227282(+) A-I      intronic chr1:213378234(+) A-I      intronic chr1:213433151(+) A-I      intronic chr1:213378119(+) A-I      intronic chr1:213351826(+) A-I      intronic chr1:213433182(+) A-I      intronic chr1:213380200(+) A-I      intronic chr1:213378108(+) A-I      intronic chr1:213445116(+) A-I      intronic chr1:213382940(+) A-I      intronic chr1:213351829(+) A-I      intronic chr1:213432785(+) A-I      intronic chr1:213352637(+) A-I      intronic chr1:213352556(+) A-I      intronic chr1:213352557(+) A-I      intronic chr1:213352567(+) A-I      intronic chr1:213399347(+) A-I      intronic chr1:213294334(+) A-I      intronic chr1:213347857(+) A-I      intronic chr1:213352678(+) A-I      intronic chr1:213352611(+) A-I      intronic chr1:213352600(+) A-I      intronic chr1:213292744(+) A-I      intronic chr1:213352525(+) A-I      intronic chr1:213428589(+) A-I      intronic chr1:213352543(+) A-I      intronic chr1:213432847(+) A-I      intronic chr1:213352548(+) A-I      intronic chr1:213352571(+) A-I      intronic chr1:213432886(+) A-I      intronic chr1:213352533(+) A-I      intronic chr1:213291217(+) A-I      intronic chr1:213294511(+) A-I      intronic chr1:213432817(+) A-I      intronic chr1:213345833(+) A-I      intronic chr1:213351722(+) A-I      intronic chr1:213366788(+) A-I      intronic chr1:213382980(+) A-I      intronic chr1:213292556(+) A-I      intronic chr1:213294504(+) A-I      intronic chr1:213365291(+) A-I      intronic chr1:213255693(+) A-I      intronic chr1:213381086(+) A-I      intronic chr1:213352297(+) A-I      intronic chr1:213380222(+) A-I      intronic chr1:213367018(+) A-I      intronic chr1:213241608(+) A-I      intronic chr1:213399389(+) A-I      intronic chr1:213351278(+) A-I      intronic chr1:213345834(+) A-I      intronic chr1:213352643(+) A-I      intronic chr1:213432791(+) A-I      intronic chr1:213351723(+) A-I      intronic chr1:213291174(+) A-I      intronic chr1:213271508(+) A-I      intronic chr1:213317672(+) A-I      intronic chr1:213292651(+) A-I      intronic chr1:213381199(+) A-I      intronic chr1:213352670(+) A-I      intronic chr1:213250486(+) A-I      intronic chr1:213241776(+) A-I      intronic chr1:213352252(+) A-I      intronic chr1:213367185(+) A-I      intronic chr1:213295233(+) A-I      intronic chr1:213432670(+) A-I      intronic chr1:213352162(+) A-I      intronic chr1:213352187(+) A-I      intronic chr1:213431588(+) A-I      intronic chr1:213428503(+) A-I      intronic chr1:213250361(+) A-I      intronic chr1:213352475(+) A-I      intronic chr1:213345799(+) A-I      intronic chr1:213242107(+) A-I      intronic chr1:213432693(+) A-I      intronic chr1:213318164(+) A-I      intronic chr1:213351727(+) A-I      intronic chr1:213352084(+) A-I      intronic chr1:213362672(+) A-I      intronic chr1:213352679(+) A-I      intronic chr1:213352161(+) A-I      intronic chr1:213352602(+) A-I      intronic chr1:213433211(+) A-I      intronic chr1:213428558(+) A-I      intronic chr1:213432727(+) A-I      intronic chr1:213382784(+) A-I      intronic chr1:213428500(+) A-I      intronic chr1:213352158(+) A-I      intronic chr1:213366741(+) A-I      intronic chr1:213401867(+) A-I      intronic chr1:213380333(+) A-I      intronic chr1:213366682(+) A-I      intronic chr1:213366666(+) A-I      intronic chr1:213431227(+) A-I      intronic chr1:213433343(+) A-I      intronic chr1:213382761(+) A-I      intronic chr1:213380206(+) A-I      intronic chr1:213352647(+) A-I      intronic chr1:213432795(+) A-I      intronic chr1:213382878(+) A-I      intronic chr1:213432639(+) A-I      intronic chr1:213431172(+) A-I      intronic chr1:213352285(+) A-I      intronic chr1:213236035(+) A-I      intronic chr1:213403971(+) A-I      intronic chr1:213428479(+) A-I      intronic chr1:213401877(+) A-I      intronic chr1:213366879(+) A-I      intronic chr1:213352715(+) A-I      intronic chr1:213254054(+) A-I      intronic chr1:213433262(+) A-I      intronic chr1:213366681(+) A-I      intronic chr1:213407446(+) A-I      intronic chr1:213380334(+) A-I      intronic chr1:213292583(+) A-I      intronic chr1:213352204(+) A-I      intronic chr1:213291179(+) A-I      intronic chr1:213407427(+) A-I      intronic chr1:213351627(+) A-I      intronic chr1:213433344(+) A-I      intronic chr1:213381142(+) A-I      intronic chr1:213263713(+) A-I      intronic chr1:213352638(+) A-I      intronic chr1:213362616(+) A-I      intronic chr1:213317870(+) A-I      intronic chr1:213399388(+) A-I      intronic chr1:213347851(+) A-I      intronic chr1:213251873(+) A-I      intronic chr1:213352243(+) A-I      intronic chr1:213352157(+) A-I      intronic chr1:213432725(+) A-I      intronic chr1:213352337(+) A-I      intronic chr1:213294409(+) A-I      intronic chr1:213428692(+) A-I      intronic chr1:213428485(+) A-I      intronic chr1:213280558(+) A-I      intronic chr1:213292669(+) A-I      intronic chr1:213378233(+) A-I      intronic chr1:213271597(+) A-I      intronic chr1:213433334(+) A-I      intronic chr1:213367158(+) A-I      intronic chr1:213271561(+) A-I      intronic chr1:213318311(+) A-I      intronic chr1:213428562(+) A-I      intronic chr1:213352246(+) A-I      intronic chr1:213318165(+) A-I      intronic chr1:213432669(+) A-I      intronic chr1:213345906(+) A-I      intronic chr1:213380278(+) A-I      intronic chr1:213379256(+) A-I      intronic chr1:213352306(+) A-I      intronic chr1:213370319(+) A-I      intronic chr1:213360312(+) A-I      intronic chr1:213432724(+) A-I      intronic chr1:213291273(+) A-I      intronic chr1:213352708(+) A-I      intronic chr1:213362627(+) A-I      intronic chr1:213433221(+) A-I      intronic chr1:213292569(+) A-I      intronic chr1:213291244(+) A-I      intronic chr1:213431531(+) A-I      intronic chr1:213242099(+) A-I      intronic chr1:213291214(+) A-I      intronic chr1:213242096(+) A-I      intronic chr1:213398797(+) A-I      intronic chr1:213305061(+) A-I      intronic chr1:213362636(+) A-I      intronic chr1:213294370(+) A-I      intronic chr1:213352587(+) A-I      intronic chr1:213352132(+) A-I      intronic chr1:213381268(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RPS6KC1	chr1:213352475(+) A-I intron -    22028664 chr1:213352525(+) A-I intron -    22028664 chr1:213352533(+) A-I intron -    22028664 chr1:213352543(+) A-I intron -    22028664 chr1:213352548(+) A-I intron -    22028664 chr1:213352556(+) A-I intron -    22028664 chr1:213352557(+) A-I intron -    22028664 chr1:213352567(+) A-I intron -    22028664 chr1:213352571(+) A-I intron -    22028664 chr1:213352587(+) A-I intron -    22028664 chr1:213352600(+) A-I intron -    22028664 chr1:213352602(+) A-I intron -    22028664 chr1:213352611(+) A-I intron -    22028664 chr1:213352637(+) A-I intron -    22028664 chr1:213352638(+) A-I intron -    22028664 chr1:213352643(+) A-I intron -    22028664 chr1:213352647(+) A-I intron -    22028664 chr1:213352678(+) A-I intron -    22028664 chr1:213352679(+) A-I intron -    22028664 chr1:213352715(+) A-I intron -    22028664 chr1:213271561(+) A-G intron -    22484847 chr1:213271597(+) A-G intron -    22484847 chr1:213304793(+) T-G intron -    22484847 chr1:213317672(+) A-G intron -    22484847 chr1:213318164(+) A-G intron -    22484847 chr1:213318165(+) A-G intron -    22484847 chr1:213318311(+) A-G intron -    22484847 chr1:213352161(+) A-G intron -    22484847 chr1:213352246(+) A-G intron -    22484847 chr1:213352252(+) A-G intron -    22484847 chr1:213352587(+) A-G intron -    22484847 chr1:213352647(+) A-G intron -    22484847 chr1:213352670(+) A-G intron -    22484847 chr1:213352679(+) A-G intron -    22484847 chr1:213352715(+) A-G intron -    22484847 chr1:213381086(+) A-G intron -    22484847 chr1:213381142(+) A-G intron -    22484847 chr1:213381199(+) A-G intron -    22484847 chr1:213381268(+) A-G intron -    22484847 chr1:213382761(+) A-G intron -    22484847 chr1:213398797(+) A-G intron -    22484847 chr1:213404009(+) T-C intron -    22484847 chr1:213407446(+) A-G intron -    22484847 chr1:213432669(+) A-G intron -    22484847 chr1:213432670(+) A-G intron -    22484847 chr1:213433211(+) A-G intron -    22484847 chr1:213433262(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RPS6KC1	chr1:213224672-213224673(+) m6A 5'UTR       24981863 chr1:213302970-213302971(+) m6A 5'UTR//CDS//exon       22608085 chr1:213303032-213303033(+) m6A 5'UTR//CDS//exon       22608085 chr1:213303042-213303043(+) m6A 5'UTR//CDS//exon       22608085 chr1:213414393-213414394(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213414427-213414428(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr1:213414574-213414575(+) m6A CDS//exon       24284625//24209618//24981863//22608085 chr1:213414629-213414630(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213414651-213414652(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213414660-213414661(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213414699-213414700(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213414708-213414709(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213414734-213414735(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213414791-213414792(+) m6A CDS//exon       24284625//24209618//24981863//22608085 chr1:213414882-213414883(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213414945-213414946(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213414964-213414965(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213414990-213414991(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22608085 chr1:213415035-213415036(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr1:213415071-213415072(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr1:213415116-213415117(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr1:213415221-213415222(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr1:213415253-213415254(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr1:213415325-213415326(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:213415336-213415337(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:213415366-213415367(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:213415389-213415390(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:213415412-213415413(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:213415420-213415421(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:213415454-213415455(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:213415481-213415482(+) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22575960//22608085 chr1:213415610-213415611(+) m6A CDS//exon       24284625//22608085 chr1:213415616-213415617(+) m6A CDS//exon       24284625//22608085 chr1:213415647-213415648(+) m6A exon//intron       - chr1:213446091-213446092(+) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr1:213446129-213446130(+) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085 chr1:213446424-213446425(+) m6A 3'UTR//exon       22608085 chr1:213446614-213446615(+) m6A 3'UTR//exon       24981863 chr1:213447596-213447597(+) m6A 3'UTR//exon       22608085 chr1:213447611-213447612(+) m6A 3'UTR//exon       22608085 chr1:213447636-213447637(+) m6A 3'UTR//exon       22608085 chr1:213447679-213447680(+) m6A 3'UTR//exon       24981863 chr1:213447716-213447717(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US4-3p	Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
	RPS6KC1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US4-3p
Interactor2: RPS6KC1

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg