Basic Information:

  VIRBase ID:  

VHID00258570

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:  MIMAT0026628          SLC27A3:  NR_145826     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US4-3p	SLC27A3
miRBase Accession/Entrez ID	MIMAT0026628	11000
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ACSVL3//FATP3//VLCS-3

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC27A3	chr1:153746885-153746886(+) m6A 5'UTR       25456834 chr1:153746929-153746930(+) m6A 5'UTR       25456834 chr1:153746969-153746970(+) m6A 5'UTR       25456834 chr1:153747018-153747019(+) m6A 5'UTR       25456834 chr1:153747083-153747084(+) m6A 5'UTR       25456834//24981863 chr1:153747106-153747107(+) m6A 5'UTR       25456834//24981863 chr1:153747207-153747208(+) m6A 5'UTR       25456834//27773535 chr1:153747268-153747269(+) m6A 5'UTR       25456834//27773535 chr1:153747537-153747538(+) m6A 5'UTR       - chr1:153747571-153747572(+) m6A 5'UTR       - chr1:153747597-153747598(+) m6A CDS       - chr1:153747614-153747615(+) m6A CDS       - chr1:153747626-153747627(+) m6A CDS       - chr1:153747672-153747673(+) m6A CDS       25456834 chr1:153747941-153747942(+) m6A CDS//exon//intron       25456834 chr1:153748067-153748068(+) m6A CDS//exon//intron       25456834 chr1:153748191-153748192(+) m6A CDS//exon//intron       25456834 chr1:153748313-153748314(+) m6A CDS//exon//intron       25456834//24981863//22608085 chr1:153748320-153748321(+) m6A CDS//exon//intron       25456834//24981863//22608085 chr1:153748658-153748659(+) m6A exon//intron       25456834 chr1:153748701-153748702(+) m6A exon//intron       25456834 chr1:153749855-153749856(+) m6A exon//intron       - chr1:153749863-153749864(+) m6A exon//intron       - chr1:153749931-153749932(+) m6A exon//intron       - chr1:153749948-153749949(+) m6A exon//intron       - chr1:153750744-153750745(+) m6A CDS//exon       - chr1:153750752-153750753(+) m6A CDS//exon       - chr1:153750791-153750792(+) m6A CDS//exon       - chr1:153750849-153750850(+) m6A exon//intron       - chr1:153750856-153750857(+) m6A exon//intron       - chr1:153750865-153750866(+) m6A exon//intron       - chr1:153752401-153752402(+) m6A CDS//exon//intron       25456834 chr1:153752464-153752465(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr1:153752480-153752481(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr1:153752510-153752511(+) m6A 3'UTR//exon       25456834//24981863//22608085 chr1:153752572-153752573(+) m6A 3'UTR//exon       25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US4-3p	Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
	SLC27A3	Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US4-3p
Interactor2: SLC27A3

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg