Basic Information:

  VIRBase ID:  

VHID00257812

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-US4-3p:  MIMAT0026628          ACKR2:  NM_001296     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-US4-3p	ACKR2
miRBase Accession/Entrez ID	MIMAT0026628	1238
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CCBP2//CCR10//CCR9//CMKBR9//D6//hD6

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ACKR2	chr3:42886879(+) A-I      intronic chr3:42886895(+) A-I      intronic chr3:42886934(+) A-I      intronic chr3:42886953(+) A-I      intronic chr3:42887256(+) A-I      intronic chr3:42887262(+) A-I      intronic chr3:42886958(+) A-I      intronic chr3:42887001(+) A-I      intronic chr3:42862592(+) A-I      intronic chr3:42862516(+) A-I      intronic chr3:42884667(+) A-I      intronic chr3:42862425(+) A-I      intronic chr3:42861964(+) A-I      intronic chr3:42862550(+) A-I      intronic chr3:42862551(+) A-I      intronic chr3:42887348(+) A-I      intronic chr3:42887287(+) A-I      intronic chr3:42884213(+) A-I      intronic chr3:42881618(+) A-I      intronic chr3:42881605(+) A-I      intronic chr3:42881588(+) A-I      intronic chr3:42878934(+) A-I      intronic chr3:42862543(+) A-I      intronic chr3:42871860(+) A-I      intronic chr3:42864116(+) A-I      intronic chr3:42864090(+) A-I      intronic chr3:42862587(+) A-I      intronic chr3:42864089(+) A-I      intronic chr3:42862558(+) A-I      intronic chr3:42863288(+) A-I      intronic chr3:42863208(+) A-I      intronic chr3:42862637(+) A-I      intronic chr3:42862600(+) A-I      intronic chr3:42886957(+) A-I      intronic chr3:42874260(+) A-I      intronic chr3:42908506(+) A-I      3'UTR chr3:42908445(+) A-I      3'UTR chr3:42908530(+) A-I      3'UTR chr3:42908504(+) A-I      3'UTR chr3:42908512(+) A-I      3'UTR chr3:42908498(+) A-I      3'UTR chr3:42908520(+) A-I      3'UTR chr3:42908452(+) A-I      3'UTR chr3:42908491(+) A-I      3'UTR chr3:42908531(+) A-I      3'UTR chr3:42908385(+) A-I      3'UTR chr3:42908429(+) A-I      3'UTR chr3:42908483(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ACKR2	chr3:42907108-42907109(+) m6A CDS//intron       - chr3:42907174-42907175(+) m6A 3'UTR//intron       - chr3:42907184-42907185(+) m6A 3'UTR//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hcmv-miR-US4-3p	Exosome B cell line (Raji)|Primary dendritic cells|T cell line (J77)     21505438
	ACKR2	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-US4-3p
Interactor2: ACKR2

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg