Basic Information:

  VIRBase ID:  

VHID00256971

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL112-5p:  MIMAT0026552          HGSNAT:  NM_152419     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL112-5p	HGSNAT
miRBase Accession/Entrez ID	MIMAT0026552	138050
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HGNAT//MPS3C//RP73//TMEM76

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HGSNAT	chr8:42999285(+) A-I      intronic chr8:42998736(+) A-I      intronic chr8:43005514(+) A-I      intronic chr8:42998864(+) A-I      intronic chr8:42998871(+) A-I      intronic chr8:43005513(+) A-I      intronic chr8:42998888(+) A-I      intronic chr8:43000839(+) A-I      intronic chr8:43000820(+) A-I      intronic chr8:43000806(+) A-I      intronic chr8:42998896(+) A-I      intronic chr8:43000790(+) A-I      intronic chr8:43020542(+) A-I      intronic chr8:43020215(+) A-I      intronic chr8:43019870(+) A-I      intronic chr8:43019866(+) A-I      intronic chr8:43018169(+) A-I      intronic chr8:43020985(+) A-I      intronic chr8:43021029(+) A-I      intronic chr8:43025383(+) A-I      intronic chr8:43030864(+) A-I      intronic chr8:43030874(+) A-I      intronic chr8:43018144(+) A-I      intronic chr8:43013359(+) A-I      intronic chr8:43030919(+) A-I      intronic chr8:43013342(+) A-I      intronic chr8:43013341(+) A-I      intronic chr8:43012810(+) A-I      intronic chr8:43011192(+) A-I      intronic chr8:43011180(+) A-I      intronic chr8:43008612(+) A-I      intronic chr8:43008598(+) A-I      intronic chr8:43007375(+) A-I      intronic chr8:43007349(+) A-I      intronic chr8:43030948(+) A-I      intronic chr8:43032438(+) A-I      intronic chr8:43032475(+) A-I      intronic chr8:43032486(+) A-I      intronic chr8:43005505(+) A-I      intronic chr8:43032507(+) A-I      intronic chr8:43032509(+) A-I      intronic chr8:43032528(+) A-I      intronic chr8:43032586(+) A-I      intronic chr8:43037543(+) A-I      intronic chr8:43020901(+) A-I      intronic chr8:43020218(+) A-I      intronic chr8:43004036(+) A-I      intronic chr8:42998932(+) A-I      intronic chr8:43000882(+) A-I      intronic chr8:43003264(+) A-I      intronic chr8:43000783(+) A-I      intronic chr8:43000779(+) A-I      intronic chr8:42998965(+) A-I      intronic chr8:42998963(+) A-I      intronic chr8:43000846(+) A-I      intronic chr8:42999287(+) A-I      intronic chr8:42998925(+) A-I      intronic chr8:42998912(+) A-I      intronic chr8:42998911(+) A-I      intronic chr8:43018157(+) A-I      intronic chr8:43018133(+) A-I      intronic chr8:43013423(+) A-I      intronic chr8:43020932(+) A-I      intronic chr8:43018142(+) A-I      intronic chr8:43012784(+) A-I      intronic chr8:43004144(+) A-I      intronic chr8:43018207(+) A-I      intronic chr8:43032439(+) A-I      intronic chr8:43002727(+) A-I      intronic chr8:43023101(+) A-I      NonSyn:His->Arg chr8:43002798(+) A-I      intronic chr8:43032516(+) A-I      intronic chr8:43017824(+) A-I      intronic chr8:43007207(+) A-I      intronic chr8:43007170(+) A-I      intronic chr8:43005229(+) A-I      intronic chr8:42999370(+) A-I      intronic chr8:43003114(+) A-I      intronic chr8:43017993(+) A-I      intronic chr8:43018055(+) A-I      intronic chr8:43003200(+) A-I      intronic chr8:43012663(+) A-I      intronic chr8:43018770(+) A-I      intronic chr8:43028205(+) A-I      intronic chr8:43007283(+) A-I      intronic chr8:43007835(+) A-I      intronic chr8:43002778(+) A-I      intronic chr8:43030813(+) A-I      intronic chr8:43054334(+) A-I      intronic chr8:42998761(+) A-I      intronic chr8:43019581(+) A-I      intronic chr8:43018186(+) A-I      intronic chr8:43007354(+) A-I      intronic chr8:43002718(+) A-I      intronic chr8:42999337(+) A-I      intronic chr8:43011163(+) A-I      intronic chr8:43007884(+) A-I      intronic chr8:43003227(+) A-I      intronic chr8:43002708(+) A-I      intronic chr8:43017987(+) A-I      intronic chr8:43007697(+) A-I      intronic chr8:43007723(+) A-I      intronic chr8:43003157(+) A-I      intronic chr8:43018794(+) A-I      intronic chr8:43038769(+) A-I      intronic chr8:43002719(+) A-I      intronic chr8:43005507(+) A-I      intronic chr8:43003176(+) A-I      intronic chr8:43020959(+) A-I      intronic chr8:43032594(+) A-I      intronic chr8:43030972(+) A-I      intronic chr8:43007647(+) A-I      intronic chr8:43018871(+) A-I      intronic chr8:43000747(+) A-I      intronic chr8:43020155(+) A-I      intronic chr8:43032666(+) A-I      intronic chr8:43008571(+) A-I      intronic chr8:42998750(+) A-I      intronic chr8:43025503(+) A-I      intronic chr8:43005278(+) A-I      intronic chr8:43019804(+) A-I      intronic chr8:43030838(+) A-I      intronic chr8:43028395(+) A-I      intronic chr8:43005535(+) A-I      intronic chr8:43003306(+) A-I      intronic chr8:43019830(+) A-I      intronic chr8:43019909(+) A-I      intronic chr8:43005118(+) A-I      intronic chr8:42999272(+) A-I      intronic chr8:43019661(+) A-I      intronic chr8:43012641(+) A-I      intronic chr8:42999389(+) A-I      intronic chr8:43000787(+) A-I      intronic chr8:43023324(+) A-I      intronic chr8:43018221(+) A-I      intronic chr8:43007355(+) A-I      intronic chr8:43000624(+) A-I      intronic chr8:43029281(+) A-I      intronic chr8:43003799(+) A-I      intronic chr8:43008604(+) A-I      intronic chr8:43018088(+) A-I      intronic chr8:43005558(+) A-I      intronic chr8:43000638(+) A-I      intronic chr8:43032478(+) A-I      intronic chr8:43028176(+) A-I      intronic chr8:43007226(+) A-I      intronic chr8:43003136(+) A-I      intronic chr8:43021000(+) A-I      intronic chr8:43020894(+) A-I      intronic chr8:43032590(+) A-I      intronic chr8:43028197(+) A-I      intronic chr8:43032580(+) A-I      intronic chr8:42999206(+) A-I      intronic chr8:43030910(+) A-I      intronic chr8:43005105(+) A-I      intronic chr8:43029239(+) A-I      intronic chr8:43018096(+) A-I      intronic chr8:42999238(+) A-I      intronic chr8:43030773(+) A-I      intronic chr8:43049303(+) A-I      intronic chr8:43020808(+) A-I      intronic chr8:43007868(+) A-I      intronic chr8:43029266(+) A-I      intronic chr8:43025502(+) A-I      intronic chr8:43018808(+) A-I      intronic chr8:43005500(+) A-I      intronic chr8:42999347(+) A-I      intronic chr8:43030978(+) A-I      intronic chr8:43007182(+) A-I      intronic chr8:42999353(+) A-I      intronic chr8:43032416(+) A-I      intronic chr8:43007323(+) A-I      intronic chr8:43025573(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	HGSNAT	chr8:43002722(+) A-I intron -    15258596 chr8:43003114(+) A-I intron -    15258596 chr8:43003136(+) A-I intron -    15258596 chr8:43003265(+) A-I intron -    15258596 chr8:43003306(+) A-I intron -    15258596 chr8:43002722(+) A-G intron -    22484847 chr8:43020035(+) A-G intron -    22484847 chr8:42998750(+) A-G intron -    22484847 chr8:42998761(+) A-G intron -    22484847 chr8:42999347(+) A-G intron -    22484847 chr8:43000624(+) A-G intron -    22484847 chr8:43000787(+) A-G intron -    22484847 chr8:43005105(+) A-G intron -    22484847 chr8:43005118(+) A-G intron -    22484847 chr8:43005500(+) A-G intron -    22484847 chr8:43005507(+) A-G intron -    22484847 chr8:43007182(+) A-G intron -    22484847 chr8:43007207(+) A-G intron -    22484847 chr8:43007226(+) A-G intron -    22484847 chr8:43007723(+) A-G intron -    22484847 chr8:43012784(+) A-G intron -    22484847 chr8:43013371(+) A-G intron -    22484847 chr8:43013423(+) A-G intron -    22484847 chr8:43019517(+) C-T intron -    22484847 chr8:43019661(+) A-G intron -    22484847 chr8:43019853(+) A-G intron -    22484847 chr8:43020958(+) A-G intron -    22484847 chr8:43020959(+) A-G intron -    22484847 chr8:43021014(+) A-G intron -    22484847 chr8:43030838(+) A-G intron -    22484847 chr8:43032416(+) A-G intron -    22484847 chr8:43032516(+) A-G intron -    22484847 chr8:43032517(+) A-G intron -    22484847 chr8:43032580(+) A-G intron -    22484847 chr8:43032594(+) A-G intron -    22484847 chr8:43032666(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HGSNAT	chr8:43053070-43053071(+) m6A CDS//exon       - chr8:43053076-43053077(+) m6A CDS//exon       - chr8:43054575-43054576(+) m6A CDS//exon       24981863//22575960 chr8:43054605-43054606(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr8:43054638-43054639(+) m6A CDS//exon       24284625//24209618//24981863//22575960//22608085 chr8:43054741-43054742(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:43054764-43054765(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:43054827-43054828(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:43054840-43054841(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:43054856-43054857(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr8:43054885-43054886(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr8:43054970-43054971(+) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085 chr8:43055046-43055047(+) m6A 3'UTR       24284625//24981863//22608085 chr8:43055088-43055089(+) m6A 3'UTR       24284625 chr8:43055658-43055659(+) m6A 3'UTR       24981863 chr8:43055684-43055685(+) m6A 3'UTR       24981863 chr8:43055694-43055695(+) m6A 3'UTR       24284625//24981863//22608085 chr8:43055773-43055774(+) m6A 3'UTR       24284625//24981863//22608085 chr8:43055801-43055802(+) m6A 3'UTR       24284625//24981863//22608085 chr8:43055808-43055809(+) m6A 3'UTR       24284625//24981863//22608085 chr8:43055818-43055819(+) m6A 3'UTR       24284625//24981863//22608085 chr8:43056018-43056019(+) m6A 3'UTR       24284625 chr8:43056048-43056049(+) m6A 3'UTR       24284625 chr8:43056172-43056173(+) m6A 3'UTR       24284625 chr8:43056286-43056287(+) m6A 3'UTR       24284625//24981863 chr8:43056306-43056307(+) m6A 3'UTR       24284625//24981863 chr8:43056400-43056401(+) m6A 3'UTR       24284625//24981863 chr8:43056418-43056419(+) m6A 3'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HGSNAT	Cytosol HCC cell line (HepG2)|HeLa-S3 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL112-5p
Interactor2: HGSNAT

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg