Basic Information:

  VIRBase ID:  

VHID00256774

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL112-5p:  MIMAT0026552          MYDGF:  NM_019107     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL112-5p	MYDGF
miRBase Accession/Entrez ID	MIMAT0026552	56005
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C19orf10//EUROIMAGE1875335//IL25//IL27//IL27w//R33729_1//SF20

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MYDGF	chr19:4661107(-) A-I      intronic chr19:4661095(-) A-I      intronic chr19:4661094(-) A-I      intronic chr19:4661081(-) A-I      intronic chr19:4669400(-) A-I      intronic chr19:4669506(-) A-I      intronic chr19:4669544(-) A-I      intronic chr19:4668792(-) A-I      intronic chr19:4666412(-) A-I      intronic chr19:4664402(-) A-I      intronic chr19:4668987(-) A-I      intronic chr19:4669007(-) A-I      intronic chr19:4669387(-) A-I      intronic chr19:4666895(-) A-I      intronic chr19:4666561(-) A-I      intronic chr19:4661077(-) A-I      intronic chr19:4659473(-) A-I      intronic chr19:4669547(-) A-I      intronic chr19:4659573(-) A-I      intronic chr19:4658911(-) A-I      intronic chr19:4665490(-) A-I      intronic chr19:4664469(-) A-I      intronic chr19:4669543(-) A-I      intronic chr19:4666112(-) A-I      intronic chr19:4660235(-) A-I      intronic chr19:4668796(-) A-I      intronic chr19:4664390(-) A-I      intronic chr19:4667515(-) A-I      intronic chr19:4667877(-) A-I      intronic chr19:4668834(-) A-I      intronic chr19:4659475(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MYDGF	chr19:4641460-4641461(-) m6A 3'UTR       - chr19:4641605-4641606(-) m6A CDS       24981863 chr19:4641617-4641618(-) m6A CDS       24981863 chr19:4654992-4654993(-) m6A intron       24284625 chr19:4655260-4655261(-) m6A intron       24284625//24209618//22608085 chr19:4655265-4655266(-) m6A intron       24284625//24209618//22608085 chr19:4655313-4655314(-) m6A intron       24284625//24209618//25456834//24981863//22608085 chr19:4655415-4655416(-) m6A intron       24284625//24209618//25456834//24981863//27773535 chr19:4655466-4655467(-) m6A intron       24284625//24209618//25456834//24981863//27773535 chr19:4655480-4655481(-) m6A intron       24284625//25456834//24981863//27773535 chr19:4655489-4655490(-) m6A intron       24284625//25456834//24981863//27773535 chr19:4657569-4657570(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085 chr19:4657613-4657614(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085 chr19:4657629-4657630(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085 chr19:4657655-4657656(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//27371828//27773536//22608085 chr19:4657730-4657731(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr19:4657758-4657759(-) Cm 3'UTR//intron       - chr19:4657769-4657770(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960 chr19:4657838-4657839(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//27371828//27773536//22575960 chr19:4657916-4657917(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773536//22575960 chr19:4659948-4659949(-) m6A CDS       27773535 chr19:4659972-4659973(-) m6A CDS       27773535 chr19:4664917-4664918(-) m6A CDS//exon       24284625//24209618//27773535//22575960 chr19:4664927-4664928(-) m6A CDS//exon       24284625//24209618//27773535//22575960 chr19:4668614-4668615(-) m6A CDS//exon       24284625//24209618//27773535//22575960 chr19:4668655-4668656(-) m6A CDS//exon       24284625//24209618//27773535//22575960 chr19:4668682-4668683(-) m6A exon//intron       24284625//24209618//27773535//27773536//22575960 chr19:4670358-4670359(-) m6A 5'UTR       24209618//25456834//24981863//27371828//27773536//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MYDGF	Chromatin K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL112-5p
Interactor2: MYDGF

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg