Basic Information:

  VIRBase ID:  

VHID00256755

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL112-5p:  MIMAT0026552          SOBP:  NM_018013     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL112-5p	SOBP
miRBase Accession/Entrez ID	MIMAT0026552	55084
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	JXC1//MRAMS

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SOBP	chr6:107829607(+) A-I      intronic chr6:107829597(+) A-I      intronic chr6:107829633(+) A-I      intronic chr6:107829636(+) A-I      intronic chr6:107972319(+) A-I      intronic chr6:107829652(+) A-I      intronic chr6:107836894(+) A-I      intronic chr6:107972318(+) A-I      intronic chr6:107836903(+) A-I      intronic chr6:107972320(+) A-I      intronic chr6:107836902(+) A-I      intronic chr6:107836887(+) A-I      intronic chr6:107836861(+) A-I      intronic chr6:107972386(+) A-I      intronic chr6:107836859(+) A-I      intronic chr6:107972350(+) A-I      intronic chr6:107829581(+) A-I      intronic chr6:107829582(+) A-I      intronic chr6:107828050(+) A-I      intronic chr6:107965306(+) A-I      intronic chr6:107843888(+) A-I      intronic chr6:107843896(+) A-I      intronic chr6:107828061(+) A-I      intronic chr6:107970152(+) A-I      intronic chr6:107970153(+) A-I      intronic chr6:107970224(+) A-I      intronic chr6:107828179(+) A-I      intronic chr6:107828225(+) A-I      intronic chr6:107970622(+) A-I      intronic chr6:107843931(+) A-I      intronic chr6:107828589(+) A-I      intronic chr6:107843886(+) A-I      intronic chr6:107843986(+) A-I      intronic chr6:107965422(+) A-I      intronic chr6:107828150(+) A-I      intronic chr6:107970652(+) A-I      intronic chr6:107965356(+) A-I      intronic chr6:107874062(+) A-I      intronic chr6:107965346(+) A-I      intronic chr6:107821446(+) A-I      intronic chr6:107837388(+) A-I      intronic chr6:107843859(+) A-I      intronic chr6:107965397(+) A-I      intronic chr6:107821327(+) A-I      intronic chr6:107965321(+) A-I      intronic chr6:107964906(+) A-I      intronic chr6:107959604(+) A-I      intronic chr6:107828649(+) A-I      intronic chr6:107970466(+) A-I      intronic chr6:107970236(+) A-I      intronic chr6:107964698(+) A-I      intronic chr6:107836939(+) A-I      intronic chr6:107828757(+) A-I      intronic chr6:107970521(+) A-I      intronic chr6:107826700(+) A-I      intronic chr6:107870021(+) A-I      intronic chr6:107874042(+) A-I      intronic chr6:107965320(+) A-I      intronic chr6:107828045(+) A-I      intronic chr6:107965429(+) A-I      intronic chr6:107978927(+) A-I      intronic chr6:107965250(+) A-I      intronic chr6:107828100(+) A-I      intronic chr6:107828590(+) A-I      intronic chr6:107829703(+) A-I      intronic chr6:107836788(+) A-I      intronic chr6:107964897(+) A-I      intronic chr6:107964653(+) A-I      intronic chr6:107828574(+) A-I      intronic chr6:107964760(+) A-I      intronic chr6:107830343(+) A-I      intronic chr6:107964721(+) A-I      intronic chr6:107874020(+) A-I      intronic chr6:107965311(+) A-I      intronic chr6:107874047(+) A-I      intronic chr6:107843810(+) A-I      intronic chr6:107970539(+) A-I      intronic chr6:107870015(+) A-I      intronic chr6:107837546(+) A-I      intronic chr6:107970252(+) A-I      intronic chr6:107844028(+) A-I      intronic chr6:107964747(+) A-I      intronic chr6:107964725(+) A-I      intronic chr6:107836774(+) A-I      intronic chr6:107828102(+) A-I      intronic chr6:107828190(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SOBP	chr6:107811406-107811407(+) m6A 5'UTR//exon       - chr6:107811588-107811589(+) m6A 5'UTR//exon       - chr6:107811645-107811646(+) m6A 5'UTR//exon       - chr6:107811805-107811806(+) m6A 5'UTR//exon       24981863 chr6:107811810-107811811(+) m6A 5'UTR//exon       24981863 chr6:107824873-107824874(+) m6A CDS//exon       24981863 chr6:107827461-107827462(+) m6A CDS//exon       24981863 chr6:107827478-107827479(+) m6A CDS//exon       24981863 chr6:107827539-107827540(+) m6A CDS//exon       24981863//22608085 chr6:107908340-107908341(+) m6A CDS       24981863 chr6:107908372-107908373(+) m6A CDS       24981863 chr6:107954743-107954744(+) m6A CDS       24284625//24981863 chr6:107954829-107954830(+) m6A CDS       24284625//25456834//24981863//22608085 chr6:107954846-107954847(+) m6A CDS       24284625//25456834//24981863//22608085 chr6:107954940-107954941(+) m6A CDS       24284625//25456834//24981863//22608085 chr6:107955119-107955120(+) m6A CDS       24284625//24981863 chr6:107955375-107955376(+) m6A CDS       24284625 chr6:107955459-107955460(+) m6A CDS       24284625 chr6:107955729-107955730(+) m6A CDS       24284625//25456834//24981863 chr6:107955784-107955785(+) m6A CDS       24284625//25456834//24981863//22608085 chr6:107955804-107955805(+) m6A CDS       24284625//25456834//24981863//22608085 chr6:107955834-107955835(+) m6A CDS       25456834//24981863//22608085 chr6:107955912-107955913(+) m6A CDS       25456834 chr6:107956112-107956113(+) m6A CDS       - chr6:107956333-107956334(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr6:107956455-107956456(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr6:107956461-107956462(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr6:107956485-107956486(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr6:107956517-107956518(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr6:107956546-107956547(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr6:107956614-107956615(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr6:107979457-107979458(+) m6A 3'UTR       24981863 chr6:107979515-107979516(+) m6A 3'UTR       24284625 chr6:107979611-107979612(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr6:107979668-107979669(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr6:107979725-107979726(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr6:107979797-107979798(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr6:107979829-107979830(+) m6A 3'UTR       24284625//24981863//22608085 chr6:107979885-107979886(+) m6A 3'UTR       22608085 chr6:107980151-107980152(+) m6A 3'UTR       24284625//24981863//22608085 chr6:107980167-107980168(+) m6A 3'UTR       24284625//24981863//22608085 chr6:107980233-107980234(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr6:107980251-107980252(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr6:107980258-107980259(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr6:107980320-107980321(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr6:107980374-107980375(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr6:107980423-107980424(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr6:107980437-107980438(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr6:107980639-107980640(+) m6A 3'UTR       27773535 chr6:107980733-107980734(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SOBP	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL112-5p
Interactor2: SOBP

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg