Basic Information:

  VIRBase ID:  

VHID00256741

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL112-5p:  MIMAT0026552          SLC6A20:  NM_022405     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hcmv-miR-UL112-5p	SLC6A20
miRBase Accession/Entrez ID	MIMAT0026552	54716
Organism	Human betaherpesvirus 5 (HHV-5)	Homo sapiens
Category	miRNA	mRNA
Alias	-	IMINO//SIT1//XT3//Xtrp3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC6A20	chr3:45822693(-) A-I      intronic chr3:45799406(-) A-I      3'UTR chr3:45829475(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC6A20	chr3:45799342-45799343(-) m6A 3'UTR//intron       - chr3:45799365-45799366(-) m6A 3'UTR//intron       - chr3:45799434-45799435(-) m6A 3'UTR//intron       - chr3:45799503-45799504(-) m6A 3'UTR//intron       - chr3:45800084-45800085(-) m6A 3'UTR//exon//intron       - chr3:45800102-45800103(-) m6A 3'UTR//exon//intron       - chr3:45800138-45800139(-) m6A 3'UTR//exon//intron       - chr3:45800166-45800167(-) m6A 3'UTR//exon//intron       - chr3:45800318-45800319(-) m6A 3'UTR//exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC6A20	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hcmv-miR-UL112-5p
Interactor2: SLC6A20

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg