Detail Information

Basic Information:


  VIRBase ID:  

VHID00256695

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hcmv-miR-UL112-5p:           TFCP2L1:      

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Interactor Information:


Interactor1 Interactor2
Symbol hcmv-miR-UL112-5p TFCP2L1
miRBase
Accession/Entrez ID		 MIMAT0026552 29842
Organism Human betaherpesvirus 5 (HHV-5) Homo sapiens
Category miRNA mRNA
Alias - CRTR1//LBP-9//LBP9

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TFCP2L1
chr2:122034051(-) A-I      intronic
chr2:122033329(-) A-I      intronic
chr2:122033320(-) A-I      intronic
chr2:122033315(-) A-I      intronic
chr2:122034060(-) A-I      intronic
chr2:121995519(-) A-I      intronic
chr2:121988254(-) A-I      intronic
chr2:121988240(-) A-I      intronic
chr2:122033311(-) A-I      intronic
chr2:122014410(-) A-I      intronic
chr2:121988227(-) A-I      intronic
chr2:121988225(-) A-I      intronic
chr2:121988191(-) A-I      intronic
chr2:122036412(-) A-I      intronic
chr2:122036574(-) A-I      intronic
chr2:122036414(-) A-I      intronic
chr2:122036436(-) A-I      intronic
chr2:122036417(-) A-I      intronic
chr2:122035701(-) A-I      intronic
chr2:122034097(-) A-I      intronic
chr2:122023242(-) A-I      intronic
chr2:122023127(-) A-I      intronic
chr2:122013493(-) A-I      intronic
chr2:122034087(-) A-I      intronic
chr2:122033420(-) A-I      intronic
chr2:122033419(-) A-I      intronic
chr2:122013490(-) A-I      intronic
chr2:121988434(-) A-I      intronic
chr2:122033414(-) A-I      intronic
chr2:122033351(-) A-I      intronic
chr2:122033350(-) A-I      intronic
chr2:122023239(-) A-I      intronic
chr2:121988395(-) A-I      intronic
chr2:121988267(-) A-I      intronic
chr2:121986669(-) A-I      intronic
chr2:121991013(-) A-I      intronic
chr2:122034168(-) A-I      intronic
chr2:122013483(-) A-I      intronic
chr2:122014449(-) A-I      intronic
chr2:122034157(-) A-I      intronic
chr2:121986765(-) A-I      intronic
chr2:122014420(-) A-I      intronic
chr2:122023661(-) A-I      intronic
chr2:122036005(-) A-I      intronic
chr2:122033317(-) A-I      intronic
chr2:121991147(-) A-I      intronic
chr2:122023125(-) A-I      intronic
chr2:122036335(-) A-I      intronic
chr2:121986634(-) A-I      intronic
chr2:122036162(-) A-I      intronic
chr2:122013457(-) A-I      intronic
chr2:121986325(-) A-I      intronic
chr2:121986118(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TFCP2L1
chr2:121981750-121981751(-) m6A 3'UTR//exon       25456834//24981863
chr2:121981802-121981803(-) m6A 3'UTR//exon       25456834//24981863
chr2:121981855-121981856(-) m6A 3'UTR//exon       25456834//24981863
chr2:121981905-121981906(-) m6A 3'UTR//exon       25456834//24981863
chr2:121981922-121981923(-) m6A CDS//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TFCP2L1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hcmv-miR-UL112-5p
Interactor2: TFCP2L1

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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